Variant report

Variant	rs9904890
Chromosome Location	chr17:33850357-33850358
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs28421706	1.00[AMR][1000 genomes]
rs28698913	1.00[AMR][1000 genomes]
rs57469324	1.00[AMR][1000 genomes]
rs9891344	1.00[AMR][1000 genomes]
rs9893011	1.00[AMR][1000 genomes]
rs9898142	1.00[AMR][1000 genomes]
rs9909880	1.00[AFR][1000 genomes]
rs9910817	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9911015	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055936	chr17:33327166-33884184	Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
2	nsv543317	chr17:33327166-33884184	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	112 gene(s)	inside rSNPs	diseases
3	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases
4	nsv519981	chr17:33841737-33864479	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv574754	chr17:33841737-33881631	Enhancers Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
6	nsv908079	chr17:33849869-34034851	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:33843200-33852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
2	chr17:33846400-33852000	Enhancers	Primary T cells from cord blood	blood
3	chr17:33846800-33851600	Enhancers	Primary hematopoietic stem cells short term culture	blood
4	chr17:33847600-33851400	Enhancers	Primary hematopoietic stem cells	blood
5	chr17:33847600-33851600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr17:33848800-33850800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr17:33848800-33851800	Genic enhancers	Primary T cells fromperipheralblood	blood
8	chr17:33848800-33851800	Enhancers	Primary T helper naive cells from peripheral blood	blood
9	chr17:33848800-33851800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr17:33849000-33851200	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
11	chr17:33849000-33851400	Weak transcription	Fetal Thymus	thymus
12	chr17:33849200-33851000	Genic enhancers	Primary T helper cells fromperipheralblood	blood
13	chr17:33849200-33851600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr17:33849400-33850600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
15	chr17:33849400-33852600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
16	chr17:33849800-33850400	Enhancers	HUES48 Cell Line	embryonic stem cell
17	chr17:33849800-33850600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr17:33849800-33850800	Strong transcription	GM12878-XiMat	blood
19	chr17:33849800-33851200	Weak transcription	Spleen	Spleen
20	chr17:33849800-33851600	Genic enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:33849800-33851600	Enhancers	Primary T killer memory cells from peripheral blood	blood
22	chr17:33849800-33851600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr17:33849800-33855000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
24	chr17:33850000-33850800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
25	chr17:33850000-33851400	Genic enhancers	Primary T regulatory cells fromperipheralblood	blood
26	chr17:33850000-33851600	Genic enhancers	Dnd41	blood
27	chr17:33850200-33850400	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr17:33850200-33850600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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