Variant report

Variant	rs9907277
Chromosome Location	chr17:18140460-18140461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:18138823..18141039-chr17:18218928..18220976,2	MCF-7	breast:
2	chr17:18138107..18140775-chr17:18159304..18163792,4	MCF-7	breast:
3	chr17:18136534..18138253-chr17:18140359..18142617,2	K562	blood:
4	chr17:18130743..18132299-chr17:18139265..18141956,2	K562	blood:
5	chr17:18139407..18141730-chr17:18142656..18144788,2	K562	blood:
6	chr17:18136077..18142771-chr17:18143654..18157956,22	MCF-7	breast:

Variant related genes	Relation type
ENSG00000177731	Chromatin interaction
ENSG00000131899	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs16961060	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28523978	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28630807	1.00[AMR][1000 genomes]
rs4925174	1.00[AMR][1000 genomes]
rs73288220	1.00[EUR][1000 genomes]
rs73980863	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9893653	1.00[AMR][1000 genomes]
rs9897239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9897554	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs9897954	1.00[AMR][1000 genomes]
rs9898548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9900382	1.00[EUR][1000 genomes]
rs9904323	1.00[AMR][1000 genomes]
rs9905667	1.00[EUR][1000 genomes]
rs9907337	1.00[EUR][1000 genomes]
rs9909732	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9909757	1.00[EUR][1000 genomes]
rs9911649	1.00[AMR][1000 genomes]
rs9941377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531183	chr17:17571035-18205309	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
2	nsv916653	chr17:17651916-18454952	Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	144 gene(s)	inside rSNPs	diseases
3	nsv533142	chr17:17691726-18236686	Active TSS Flanking Active TSS Enhancers Strong transcription Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	116 gene(s)	inside rSNPs	diseases
4	nsv482491	chr17:17959577-18153920	Enhancers Genic enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv1061162	chr17:17978838-18259234	Flanking Active TSS Weak transcription Genic enhancers Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv492305	chr17:17980441-18424702	Flanking Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' Weak transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases
7	nsv907773	chr17:18099962-18206234	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	nsv907774	chr17:18103907-18206234	Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
9	nsv907775	chr17:18108496-18206234	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
10	nsv543246	chr17:18121007-18165604	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
11	nsv9503	chr17:18121474-18169166	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
12	nsv907776	chr17:18122485-18170948	Enhancers Strong transcription Genic enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
13	nsv1066718	chr17:18125122-18180807	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
14	nsv907777	chr17:18131087-18163262	Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:18129600-18148400	Weak transcription	Small Intestine	intestine
2	chr17:18130000-18145400	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr17:18130000-18148200	Weak transcription	Fetal Kidney	kidney
4	chr17:18130000-18148200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr17:18130000-18149200	Weak transcription	Psoas Muscle	Psoas
6	chr17:18130200-18145600	Weak transcription	A549	lung
7	chr17:18130200-18147000	Weak transcription	Primary hematopoietic stem cells	blood
8	chr17:18130200-18147000	Weak transcription	Liver	Liver
9	chr17:18130200-18150800	Weak transcription	Right Atrium	heart
10	chr17:18130400-18142400	Weak transcription	Fetal Heart	heart
11	chr17:18130400-18146200	Weak transcription	NHDF-Ad	bronchial
12	chr17:18130400-18148200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr17:18130600-18148200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr17:18131200-18148400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
15	chr17:18134600-18149600	Strong transcription	Fetal Intestine Small	intestine
16	chr17:18134600-18150800	Weak transcription	Fetal Brain Male	brain
17	chr17:18134600-18150800	Strong transcription	Fetal Stomach	stomach
18	chr17:18134800-18142000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
19	chr17:18135000-18149400	Strong transcription	Fetal Muscle Trunk	muscle
20	chr17:18135200-18141600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
21	chr17:18135200-18149400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
22	chr17:18135200-18149400	Strong transcription	Fetal Intestine Large	intestine
23	chr17:18135200-18149600	Strong transcription	HUES6 Cell Line	embryonic stem cell
24	chr17:18135200-18150000	Strong transcription	Fetal Muscle Leg	muscle
25	chr17:18135200-18150600	Strong transcription	Brain Germinal Matrix	brain
26	chr17:18135200-18160000	Strong transcription	Fetal Brain Female	brain
27	chr17:18135400-18142600	Strong transcription	Dnd41	blood
28	chr17:18135400-18149800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
29	chr17:18135400-18150000	Strong transcription	HUES48 Cell Line	embryonic stem cell
30	chr17:18135400-18150000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
31	chr17:18135400-18159600	Strong transcription	Primary T cells from cord blood	blood
32	chr17:18135400-18160200	Strong transcription	Thymus	Thymus
33	chr17:18135600-18141800	Strong transcription	Primary T cells fromperipheralblood	blood
34	chr17:18135600-18142000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr17:18135600-18142600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr17:18135600-18149600	Strong transcription	Placenta	Placenta
37	chr17:18135600-18149800	Strong transcription	HUES64 Cell Line	embryonic stem cell
38	chr17:18135600-18149800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
39	chr17:18135600-18150600	Strong transcription	Adipose Nuclei	Adipose
40	chr17:18135600-18159000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr17:18135600-18159400	Strong transcription	Fetal Lung	lung
42	chr17:18135600-18160000	Strong transcription	Cortex derived primary cultured neurospheres	brain
43	chr17:18135800-18142000	Strong transcription	Right Ventricle	heart
44	chr17:18135800-18149600	Strong transcription	Gastric	stomach
45	chr17:18135800-18150000	Strong transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr17:18135800-18150600	Strong transcription	Stomach Smooth Muscle	stomach
47	chr17:18135800-18160400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr17:18136000-18141600	Strong transcription	Primary T helper cells PMA-I stimulated	--
49	chr17:18136000-18142000	Strong transcription	NHLF	lung
50	chr17:18136000-18142200	Strong transcription	H9 Cell Line	embryonic stem cell

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