Variant report

Variant	rs9909586
Chromosome Location	chr17:66494657-66494658
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66489499..66498114-chr17:66506415..66512369,16	MCF-7	breast:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28673226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801441	1.00[AMR][1000 genomes]
rs9889466	1.00[AMR][1000 genomes]
rs9895104	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897875	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902350	0.91[AFR][1000 genomes]
rs9906791	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs9910528	1.00[AMR][1000 genomes]
rs9911549	1.00[AMR][1000 genomes]
rs9912712	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66493400-66495800	Enhancers	Primary B cells from peripheral blood	blood
2	chr17:66493600-66495400	Flanking Active TSS	GM12878-XiMat	blood
3	chr17:66493800-66495000	Enhancers	Thymus	Thymus
4	chr17:66493800-66495200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
5	chr17:66493800-66495200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr17:66493800-66495200	Enhancers	Sigmoid Colon	Sigmoid Colon
7	chr17:66493800-66495200	Enhancers	Stomach Mucosa	stomach
8	chr17:66493800-66495400	Enhancers	Primary hematopoietic stem cells	blood
9	chr17:66493800-66495400	Enhancers	Colonic Mucosa	Colon
10	chr17:66493800-66495400	Enhancers	Spleen	Spleen
11	chr17:66493800-66495600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr17:66493800-66495600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr17:66493800-66495800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
14	chr17:66494000-66495000	Enhancers	Duodenum Smooth Muscle	Duodenum
15	chr17:66494000-66495200	Enhancers	HepG2	liver
16	chr17:66494000-66495400	Flanking Active TSS	Primary B cells from cord blood	blood
17	chr17:66494000-66495600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr17:66494000-66496000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
19	chr17:66494200-66495000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
20	chr17:66494200-66495000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr17:66494200-66495000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr17:66494200-66495000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr17:66494200-66495000	Flanking Active TSS	Duodenum Mucosa	Duodenum
24	chr17:66494200-66495200	Enhancers	Cortex derived primary cultured neurospheres	brain
25	chr17:66494200-66495200	Enhancers	Fetal Muscle Leg	muscle
26	chr17:66494200-66495400	Enhancers	Liver	Liver
27	chr17:66494200-66495400	Enhancers	Left Ventricle	heart
28	chr17:66494200-66495400	Enhancers	Pancreas	Pancrea
29	chr17:66494200-66495400	Enhancers	HMEC	breast
30	chr17:66494400-66494800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
31	chr17:66494400-66495000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:66494400-66495400	Enhancers	Ovary	ovary
33	chr17:66494400-66496000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
34	chr17:66494600-66494800	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
35	chr17:66494600-66494800	Enhancers	Adipose Nuclei	Adipose
36	chr17:66494600-66495000	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
37	chr17:66494600-66495000	Enhancers	Primary T cells fromperipheralblood	blood
38	chr17:66494600-66495000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr17:66494600-66495000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr17:66494600-66495000	Enhancers	Psoas Muscle	Psoas
41	chr17:66494600-66495000	Enhancers	Skeletal Muscle Male	skeletal muscle
42	chr17:66494600-66495000	Enhancers	Skeletal Muscle Female	skeletal muscle
43	chr17:66494600-66495000	Enhancers	Small Intestine	intestine
44	chr17:66494600-66495000	Enhancers	Osteobl	bone
45	chr17:66494600-66495200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
46	chr17:66494600-66495200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr17:66494600-66495200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
48	chr17:66494600-66495200	Enhancers	Brain Inferior Temporal Lobe	brain
49	chr17:66494600-66495200	Flanking Active TSS	Fetal Heart	heart
50	chr17:66494600-66495200	Enhancers	K562	blood

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