Variant report

Variant	rs9912712
Chromosome Location	chr17:66504287-66504288
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66503157..66506597-chr17:66507024..66509568,3	K562	blood:

Variant related genes	Relation type
ENSG00000108946	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs28673226	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28801441	1.00[AMR][1000 genomes]
rs9889466	1.00[AMR][1000 genomes]
rs9895104	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9897875	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9902350	0.85[AFR][1000 genomes]
rs9906791	1.00[YRI][hapmap]
rs9909586	1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9910528	1.00[AMR][1000 genomes]
rs9911549	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66502000-66505000	Weak transcription	Primary B cells from cord blood	blood
2	chr17:66502000-66507600	Weak transcription	Left Ventricle	heart
3	chr17:66503000-66505200	Enhancers	HepG2	liver
4	chr17:66503200-66504400	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr17:66503200-66505000	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr17:66503400-66506200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:66503600-66504400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:66503600-66504400	Enhancers	Muscle Satellite Cultured Cells	--
9	chr17:66503600-66504400	Enhancers	HSMMtube	muscle
10	chr17:66503600-66504600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr17:66503600-66507400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:66503600-66507400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr17:66503600-66507600	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr17:66503800-66505400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr17:66504000-66504400	Enhancers	HSMM	muscle
16	chr17:66504000-66507400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:66504200-66504400	Enhancers	Adipose Nuclei	Adipose
18	chr17:66504200-66504400	Enhancers	Liver	Liver
19	chr17:66504200-66505200	Weak transcription	HUVEC	blood vessel
20	chr17:66504200-66506000	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr17:66504200-66507200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
22	chr17:66504200-66507400	Weak transcription	NHLF	lung
23	chr17:66504200-66507400	Weak transcription	Osteobl	bone
24	chr17:66504200-66507600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell

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