Variant report

Variant	rs9920840
Chromosome Location	chr15:74054462-74054463
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12899897	0.86[EUR][1000 genomes]
rs7183428	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743327	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8040531	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806165	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74046000-74056200	Weak transcription	Right Atrium	heart
2	chr15:74047400-74056200	Weak transcription	Esophagus	oesophagus
3	chr15:74049800-74057000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74051200-74056200	Weak transcription	Left Ventricle	heart
5	chr15:74052000-74056200	Weak transcription	Right Ventricle	heart
6	chr15:74052600-74059000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
8	chr15:74053600-74055600	Weak transcription	Ovary	ovary
9	chr15:74053800-74056200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:74054400-74057400	Enhancers	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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