Variant report

Variant	rs12899897
Chromosome Location	chr15:74055191-74055192
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16958177	0.85[JPT][hapmap]
rs2415230	0.97[GIH][hapmap];0.86[JPT][hapmap]
rs4886597	1.00[ASN][1000 genomes]
rs4887122	0.81[JPT][hapmap]
rs4887140	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];0.91[JPT][hapmap];0.97[LWK][hapmap];0.88[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4887141	1.00[ASW][hapmap];0.89[CEU][hapmap];0.97[GIH][hapmap];0.90[JPT][hapmap];0.97[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7183428	0.82[EUR][1000 genomes]
rs7402796	0.85[JPT][hapmap]
rs8040531	1.00[CEU][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap];0.86[EUR][1000 genomes]
rs896598	0.85[JPT][hapmap]
rs9806165	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9920840	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74046000-74056200	Weak transcription	Right Atrium	heart
2	chr15:74047400-74056200	Weak transcription	Esophagus	oesophagus
3	chr15:74049800-74057000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:74051200-74056200	Weak transcription	Left Ventricle	heart
5	chr15:74052000-74056200	Weak transcription	Right Ventricle	heart
6	chr15:74052600-74059000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
8	chr15:74053600-74055600	Weak transcription	Ovary	ovary
9	chr15:74053800-74056200	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr15:74054400-74057400	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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