Variant report

Variant	rs2415230
Chromosome Location	chr15:74059081-74059082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs3743099	0.95[ASN][1000 genomes]
rs4886597	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4887140	0.94[GIH][hapmap];0.88[MEX][hapmap]
rs4887141	0.94[GIH][hapmap]
rs7169087	0.94[ASN][1000 genomes]
rs9806165	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2415230	GRAMD2	cis	parietal	SCAN

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
2	chr15:74057200-74060400	Weak transcription	Esophagus	oesophagus
3	chr15:74057200-74066000	Weak transcription	Right Atrium	heart
4	chr15:74057400-74066400	Weak transcription	Right Ventricle	heart
5	chr15:74058200-74059200	Weak transcription	Ovary	ovary
6	chr15:74058800-74061000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:74059000-74059400	Enhancers	Gastric	stomach
8	chr15:74059000-74061200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links