Variant report

Variant	rs7169087
Chromosome Location	chr15:74068380-74068381
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:74067385..74071671-chr15:74073576..74076433,3	K562	blood:
2	chr15:74064186..74066703-chr15:74067930..74069882,2	MCF-7	breast:
3	chr15:74065767..74070891-chr15:74072493..74077043,5	K562	blood:
4	chr15:74026974..74029000-chr15:74067503..74070280,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2415230	1.00[CHB][hapmap];0.87[CHD][hapmap];1.00[JPT][hapmap];0.88[MEX][hapmap];0.94[ASN][1000 genomes]
rs3743099	0.93[ASN][1000 genomes]
rs4887140	1.00[MEX][hapmap]
rs8040531	0.84[LWK][hapmap]
rs9806165	0.87[AFR][1000 genomes];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7169087	NR2E3	cis	cerebellum	SCAN
rs7169087	STRA6	cis	parietal	SCAN

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74060800-74073000	Weak transcription	H1 Cell Line	embryonic stem cell
2	chr15:74061000-74076600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr15:74064200-74073200	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr15:74066000-74076400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr15:74066400-74073400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:74066600-74080200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr15:74066800-74068800	Enhancers	Psoas Muscle	Psoas
8	chr15:74067400-74068600	Enhancers	Skeletal Muscle Male	skeletal muscle
9	chr15:74067600-74068400	Enhancers	Skeletal Muscle Female	skeletal muscle
10	chr15:74067600-74068600	Weak transcription	Hela-S3	cervix
11	chr15:74067600-74069600	Weak transcription	NHEK	skin
12	chr15:74067600-74070000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr15:74067600-74071200	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr15:74067600-74072000	Weak transcription	K562	blood
15	chr15:74067600-74077400	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:74067800-74069400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr15:74067800-74069400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr15:74067800-74069400	Weak transcription	Left Ventricle	heart
19	chr15:74067800-74073000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:74067800-74073000	Weak transcription	Fetal Heart	heart
21	chr15:74068000-74068400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:74068000-74068400	Weak transcription	Right Atrium	heart
23	chr15:74068000-74068400	Weak transcription	Right Ventricle	heart
24	chr15:74068000-74069400	Weak transcription	Esophagus	oesophagus

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