Variant report

Variant	rs3743099
Chromosome Location	chr15:74062306-74062307
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs16958177	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs16958181	0.88[AMR][1000 genomes]
rs16958188	0.88[AMR][1000 genomes]
rs16958221	1.00[AFR][1000 genomes]
rs2415230	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs7169087	0.93[ASN][1000 genomes]
rs9806165	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74053000-74067000	Weak transcription	Fetal Brain Male	brain
2	chr15:74057200-74066000	Weak transcription	Right Atrium	heart
3	chr15:74057400-74066400	Weak transcription	Right Ventricle	heart
4	chr15:74060400-74067200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:74060600-74062400	Weak transcription	Left Ventricle	heart
6	chr15:74060600-74066000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:74060800-74063800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:74060800-74065800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr15:74060800-74073000	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr15:74061000-74066000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74061000-74076600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
12	chr15:74061800-74062600	Enhancers	Fetal Lung	lung
13	chr15:74062000-74062400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr15:74062000-74064400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr15:74062200-74062400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr15:74062200-74062400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr15:74062200-74062400	Enhancers	Gastric	stomach
18	chr15:74062200-74062800	Enhancers	Esophagus	oesophagus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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