Variant report

Variant	rs16958177
Chromosome Location	chr15:74020637-74020638
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11630531	0.93[ASN][1000 genomes]
rs12914566	0.88[ASN][1000 genomes]
rs1382420	0.97[ASN][1000 genomes]
rs1548099	0.93[ASN][1000 genomes]
rs16958181	0.88[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs16958188	0.88[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs16958221	1.00[AFR][1000 genomes]
rs3743099	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4887122	0.94[CHB][hapmap];0.94[CHD][hapmap];0.95[JPT][hapmap];0.85[MEX][hapmap];0.85[ASN][1000 genomes]
rs4887140	0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs4887141	0.94[CHB][hapmap];0.95[JPT][hapmap]
rs7402796	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs8024213	0.83[ASN][1000 genomes]
rs8182008	0.92[ASN][1000 genomes]
rs896598	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74007400-74031400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:74015800-74033400	Weak transcription	Ovary	ovary
3	chr15:74018400-74021800	Enhancers	Left Ventricle	heart
4	chr15:74019400-74020800	Enhancers	Fetal Heart	heart
5	chr15:74020000-74020800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:74020200-74020800	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
7	chr15:74020200-74021800	Enhancers	Right Ventricle	heart
8	chr15:74020400-74021400	Weak transcription	Right Atrium	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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