Variant report

Variant	rs1548099
Chromosome Location	chr15:74025928-74025929
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11072435	1.00[CEU][hapmap]
rs11630531	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11632314	1.00[CEU][hapmap]
rs12914566	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1382420	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs16958177	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs16958181	1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16958188	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4887122	0.94[CHB][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4887140	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs4887141	0.94[CHB][hapmap];0.95[JPT][hapmap];0.86[ASN][1000 genomes]
rs7402796	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs8024213	0.91[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs8182008	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs896598	0.94[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74007400-74031400	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr15:74015800-74033400	Weak transcription	Ovary	ovary
3	chr15:74021800-74033400	Weak transcription	Right Atrium	heart
4	chr15:74022200-74028000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr15:74023600-74036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr15:74025400-74026000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr15:74025600-74026000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr15:74025600-74035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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