Variant report

Variant	rs7402796
Chromosome Location	chr15:74034796-74034797
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NR2F2	chr15:74034740-74035931	MCF-7	breast:	n/a	n/a
2	SIN3AK20	chr15:74034468-74036009	MCF-7	breast:	n/a	n/a
3	ZNF263	chr15:74034666-74035099	HEK293-T-REx	kidney:	n/a	n/a
4	GATA3	chr15:74034443-74035679	MCF-7	breast:	n/a	chr15:74035011-74035024
5	GATA3	chr15:74034554-74035840	MCF-7	breast:	n/a	chr15:74035011-74035024

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74033365..74035153-chr15:74042394..74044937,2	MCF-7	breast:

Variant related genes	Relation type
C15orf59	TF binding region
ENSG00000205363	Chromatin interaction

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11630531	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12914566	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1382420	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1548099	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16958177	0.94[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs16958181	0.86[ASN][1000 genomes]
rs16958188	0.85[ASN][1000 genomes]
rs4887122	1.00[CHB][hapmap];0.95[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887140	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4887141	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs8024213	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182008	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs896598	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74023600-74036400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:74025600-74035200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:74030000-74039200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr15:74030200-74034800	Weak transcription	Brain Germinal Matrix	brain
5	chr15:74031200-74038600	Weak transcription	Fetal Lung	lung
6	chr15:74031400-74035000	Strong transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:74031600-74035000	Weak transcription	Esophagus	oesophagus
8	chr15:74031600-74035000	Strong transcription	Fetal Brain Female	brain
9	chr15:74031800-74035600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr15:74031800-74036400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr15:74033000-74035600	Enhancers	Brain Hippocampus Middle	brain
12	chr15:74033000-74035800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr15:74033000-74035800	Enhancers	Brain Substantia Nigra	brain
14	chr15:74033000-74037400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr15:74033200-74035800	Enhancers	Right Ventricle	heart
16	chr15:74033200-74035800	Enhancers	Hela-S3	cervix
17	chr15:74033200-74038600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr15:74033400-74035000	Weak transcription	Stomach Smooth Muscle	stomach
19	chr15:74033400-74036400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr15:74033400-74038800	Weak transcription	Fetal Brain Male	brain
21	chr15:74033600-74035000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr15:74033600-74035000	Weak transcription	Fetal Stomach	stomach
23	chr15:74033600-74035200	Weak transcription	Colon Smooth Muscle	Colon
24	chr15:74033600-74036000	Enhancers	NHDF-Ad	bronchial
25	chr15:74033800-74035000	Weak transcription	Adipose Nuclei	Adipose
26	chr15:74033800-74035400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr15:74034000-74034800	Weak transcription	Right Atrium	heart
28	chr15:74034000-74035000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr15:74034000-74035000	Weak transcription	HSMMtube	muscle
30	chr15:74034000-74038800	Weak transcription	Ovary	ovary
31	chr15:74034200-74035200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr15:74034200-74038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
33	chr15:74034400-74038600	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr15:74034400-74038800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
35	chr15:74034600-74035000	Strong transcription	Brain Anterior Caudate	brain
36	chr15:74034600-74035400	Enhancers	Left Ventricle	heart
37	chr15:74034600-74037400	Weak transcription	Brain Cingulate Gyrus	brain
38	chr15:74034600-74038800	Weak transcription	Brain Angular Gyrus	brain

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