Variant report

Variant	rs4887140
Chromosome Location	chr15:74046663-74046664
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF263	chr15:74046058-74047144	HEK293-T-REx	kidney:	n/a	chr15:74046382-74046403
2	TEAD4	chr15:74046161-74046686	H1-hESC	embryonic stem cell:	n/a	n/a
3	SP1	chr15:74046165-74046697	H1-hESC	embryonic stem cell:	n/a	chr15:74046444-74046455

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74046017..74047520-chr15:74054449..74056140,2	MCF-7	breast:
2	chr15:74038183..74040978-chr15:74046386..74048785,2	MCF-7	breast:

Variant related genes	Relation type
C15orf59	TF binding region

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11630531	0.86[ASN][1000 genomes]
rs12899897	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1548099	0.86[ASN][1000 genomes]
rs16958177	0.94[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap]
rs16958181	0.82[ASN][1000 genomes]
rs2415230	0.94[GIH][hapmap];0.88[MEX][hapmap]
rs4887122	1.00[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs4887141	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72743327	0.83[EUR][1000 genomes]
rs7402796	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs8024213	0.87[ASN][1000 genomes]
rs8040531	0.89[CEU][hapmap];0.84[MKK][hapmap];1.00[TSI][hapmap];0.89[YRI][hapmap]
rs8182008	0.87[ASN][1000 genomes]
rs896598	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs9806165	0.93[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3421437	chr15:74043924-74046872	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Bivalent Enhancer Enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	esv9813	chr15:74044169-74048692	Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	esv3418540	chr15:74044749-74046697	Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74045800-74047200	Bivalent Enhancer	Fetal Lung	lung
2	chr15:74046000-74046800	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
3	chr15:74046000-74046800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74046000-74046800	Flanking Bivalent TSS/Enh	HUES64 Cell Line	embryonic stem cell
5	chr15:74046000-74047000	Enhancers	Fetal Brain Female	brain
6	chr15:74046000-74047000	Bivalent Enhancer	Fetal Muscle Leg	muscle
7	chr15:74046000-74047200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr15:74046000-74047400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:74046000-74056200	Weak transcription	Right Atrium	heart
10	chr15:74046200-74047000	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr15:74046200-74047000	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr15:74046400-74046800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
13	chr15:74046400-74046800	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr15:74046400-74047200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
15	chr15:74046400-74047200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr15:74046400-74048000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:74046400-74050200	Weak transcription	Right Ventricle	heart
18	chr15:74046600-74046800	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
19	chr15:74046600-74046800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr15:74046600-74047000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr15:74046600-74047000	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr15:74046600-74047000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
23	chr15:74046600-74047200	Enhancers	H9 Cell Line	embryonic stem cell
24	chr15:74046600-74047400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr15:74046600-74052200	Weak transcription	Fetal Brain Male	brain

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