Variant report

Variant	rs896598
Chromosome Location	chr15:74036629-74036630
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	USF1	chr15:74036594-74037025	H1-hESC	embryonic stem cell:	n/a	n/a
2	E2F6	chr15:74036509-74037082	H1-hESC	embryonic stem cell:	n/a	n/a
3	MAX	chr15:74036618-74037036	H1-hESC	embryonic stem cell:	n/a	chr15:74036821-74036830
4	MAX	chr15:74036579-74037053	H1-hESC	embryonic stem cell:	n/a	chr15:74036821-74036830

Variant related genes	Relation type
C15orf59	TF binding region

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11630531	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12914566	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1382420	0.91[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1548099	0.91[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs16958177	0.94[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.86[ASN][1000 genomes]
rs16958181	0.86[ASN][1000 genomes]
rs16958188	0.85[ASN][1000 genomes]
rs4887122	1.00[ASW][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4887140	1.00[CHB][hapmap];0.97[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs4887141	1.00[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs7402796	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8024213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs8182008	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv471252	chr15:74006691-74089793	Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv569970	chr15:74016622-74059081	Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74030000-74039200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr15:74031200-74038600	Weak transcription	Fetal Lung	lung
3	chr15:74033000-74037400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr15:74033200-74038600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr15:74033400-74038800	Weak transcription	Fetal Brain Male	brain
6	chr15:74034000-74038800	Weak transcription	Ovary	ovary
7	chr15:74034200-74038600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:74034400-74038600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:74034400-74038800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
10	chr15:74034600-74037400	Weak transcription	Brain Cingulate Gyrus	brain
11	chr15:74034600-74038800	Weak transcription	Brain Angular Gyrus	brain
12	chr15:74035000-74038600	Weak transcription	Cortex derived primary cultured neurospheres	brain
13	chr15:74035000-74043000	Strong transcription	Fetal Stomach	stomach
14	chr15:74035200-74037800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr15:74035200-74038000	Enhancers	ES-I3 Cell Line	embryonic stem cell
16	chr15:74035200-74038000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
17	chr15:74035400-74038600	Weak transcription	HSMMtube	muscle
18	chr15:74035400-74038800	Weak transcription	Right Atrium	heart
19	chr15:74035400-74039000	Weak transcription	Left Ventricle	heart
20	chr15:74035600-74038000	Enhancers	iPS-20b Cell Line	embryonic stem cell
21	chr15:74035600-74038600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:74035600-74038800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr15:74035600-74039000	Weak transcription	Brain Hippocampus Middle	brain
24	chr15:74035600-74039600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr15:74035600-74043800	Weak transcription	Esophagus	oesophagus
26	chr15:74035800-74036800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr15:74035800-74038800	Weak transcription	Adipose Nuclei	Adipose
28	chr15:74035800-74038800	Weak transcription	Right Ventricle	heart
29	chr15:74035800-74039200	Weak transcription	Hela-S3	cervix
30	chr15:74035800-74039400	Weak transcription	A549	lung
31	chr15:74035800-74042400	Weak transcription	Stomach Smooth Muscle	stomach
32	chr15:74035800-74043200	Weak transcription	Brain Substantia Nigra	brain
33	chr15:74036200-74037600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
34	chr15:74036200-74037800	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr15:74036400-74037000	Enhancers	HUES64 Cell Line	embryonic stem cell
36	chr15:74036400-74037200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
37	chr15:74036400-74037200	Strong transcription	Fetal Brain Female	brain
38	chr15:74036400-74037800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr15:74036400-74038000	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
40	chr15:74036400-74041200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:74036600-74036800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr15:74036600-74036800	Enhancers	Brain Anterior Caudate	brain
43	chr15:74036600-74037000	Enhancers	H1 Cell Line	embryonic stem cell
44	chr15:74036600-74037000	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr15:74036600-74037000	Genic enhancers	Brain Germinal Matrix	brain
46	chr15:74036600-74037600	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr15:74036600-74037800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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