Variant report

Variant	rs9922019
Chromosome Location	chr16:82167202-82167203
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs28521974	0.82[AFR][1000 genomes]
rs28538445	0.82[AFR][1000 genomes]
rs28612577	0.82[AFR][1000 genomes]
rs28676879	1.00[AMR][1000 genomes]
rs8056367	0.83[AFR][1000 genomes]
rs9923195	0.85[AFR][1000 genomes]
rs9923891	0.82[AFR][1000 genomes]
rs9926005	0.80[AFR][1000 genomes]
rs9932998	0.85[AFR][1000 genomes]
rs9933535	0.82[AFR][1000 genomes]
rs9939097	1.00[AMR][1000 genomes]
rs9939218	0.82[AFR][1000 genomes]
rs9939665	0.82[AFR][1000 genomes]
rs9940206	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv457578	chr16:82136566-82197883	Weak transcription Genic enhancers Enhancers Strong transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv573366	chr16:82136566-82197883	Strong transcription Active TSS Weak transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
6	nsv457579	chr16:82150293-82216622	Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	nsv573368	chr16:82150293-82216622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
8	nsv907013	chr16:82154619-82196808	Strong transcription Genic enhancers Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv525467	chr16:82154619-82223485	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
10	nsv457580	chr16:82165183-82182104	Strong transcription Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv573369	chr16:82165183-82182104	Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv573370	chr16:82165183-82185320	Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
13	nsv1061064	chr16:82165314-82213799	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
14	nsv1056381	chr16:82165314-82215388	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
15	nsv1062687	chr16:82165516-82213799	Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82157000-82191200	Weak transcription	Fetal Brain Male	brain
2	chr16:82160200-82172200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:82160800-82170600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr16:82160800-82171600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr16:82160800-82171600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr16:82160800-82172200	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr16:82160800-82172200	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr16:82161000-82172000	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr16:82161000-82172000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr16:82161200-82170200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
11	chr16:82162800-82167400	Weak transcription	Thymus	Thymus
12	chr16:82164000-82169000	Weak transcription	HepG2	liver
13	chr16:82164200-82179400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr16:82165800-82179200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr16:82166000-82172200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr16:82166600-82168200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr16:82166600-82172800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr16:82166800-82167400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
19	chr16:82167000-82167400	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr16:82167000-82168000	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr16:82167000-82168600	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr16:82167000-82168600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr16:82167200-82167400	Enhancers	Primary hematopoietic stem cells	blood
24	chr16:82167200-82167400	Weak transcription	Esophagus	oesophagus
25	chr16:82167200-82167600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
26	chr16:82167200-82167600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
27	chr16:82167200-82167800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
28	chr16:82167200-82167800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr16:82167200-82167800	Enhancers	Fetal Thymus	thymus
30	chr16:82167200-82168000	Flanking Active TSS	Primary T cells from cord blood	blood
31	chr16:82167200-82168000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
32	chr16:82167200-82168200	Enhancers	Primary T cells fromperipheralblood	blood
33	chr16:82167200-82168400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr16:82167200-82168400	Flanking Active TSS	Dnd41	blood
35	chr16:82167200-82168600	Enhancers	Primary T helper naive cells from peripheral blood	blood
36	chr16:82167200-82168800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr16:82167200-82170200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
38	chr16:82167200-82179200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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