Variant report

Variant	rs9923076
Chromosome Location	chr16:71044237-71044238
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71027582..71030361-chr16:71042724..71044400,2	MCF-7	breast:
2	chr16:71041382..71046613-chr16:71055101..71057846,4	MCF-7	breast:
3	chr16:71043873..71044605-chr5:87436587..87437176,2	MCF-7	breast:
4	chr16:71043679..71045910-chr16:71049749..71051358,2	MCF-7	breast:
5	chr16:71038428..71041752-chr16:71042171..71045244,4	MCF-7	breast:
6	chr1:147726894..147727805-chr16:71044140..71044879,2	MCF-7	breast:
7	chr1:149223845..149225447-chr16:71042533..71044256,2	MCF-7	breast:
8	chr16:71042808..71045554-chr16:71046504..71049252,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000206737	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13330774	0.83[AMR][1000 genomes]
rs13331166	1.00[AMR][1000 genomes]
rs195669	1.00[AMR][1000 genomes]
rs2069081	1.00[AMR][1000 genomes]
rs28477272	0.83[AMR][1000 genomes]
rs28548248	0.83[AMR][1000 genomes]
rs28582322	1.00[AMR][1000 genomes]
rs7189980	1.00[AMR][1000 genomes]
rs7198808	1.00[AMR][1000 genomes]
rs8062914	1.00[AMR][1000 genomes]
rs9673385	1.00[AMR][1000 genomes]
rs9927009	0.83[AMR][1000 genomes]
rs9941333	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:36 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061191	chr16:70754975-71201367	Weak transcription Active TSS Strong transcription Flanking Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
2	nsv1059478	chr16:70773597-71237055	Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2758429	chr16:70807122-71316983	Active TSS ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	esv2758653	chr16:70807122-71316983	Weak transcription Strong transcription Enhancers Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
5	nsv916160	chr16:70809280-71120138	ZNF genes & repeats Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
6	esv2757641	chr16:70833949-71200049	Flanking Active TSS Weak transcription Bivalent Enhancer Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
7	nsv1057834	chr16:70842097-71075615	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
8	esv2446050	chr16:70845377-71202717	Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
9	nsv1057681	chr16:70846071-71142397	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
10	esv2762121	chr16:70846071-71202797	Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
11	esv2763140	chr16:70846071-71202797	Enhancers ZNF genes & repeats Weak transcription Active TSS Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
12	esv18746	chr16:70847248-71202529	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
13	nsv977996	chr16:70848125-71201713	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
14	nsv1065452	chr16:70848374-71168820	ZNF genes & repeats Weak transcription Enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
15	nsv1067462	chr16:70848374-71201367	Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
16	nsv542943	chr16:70848374-71201367	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
17	nsv1059620	chr16:70848374-71237055	Bivalent Enhancer Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
18	nsv542944	chr16:70848374-71237055	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
19	nsv870263	chr16:70848593-71201134	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
20	nsv1057278	chr16:70854381-71142397	Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
21	nsv1066534	chr16:70854381-71143055	Enhancers Genic enhancers Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
22	nsv1063374	chr16:70855190-71205896	Bivalent Enhancer Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
23	nsv533443	chr16:70860486-71196477	Enhancers Bivalent Enhancer Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
24	nsv1056436	chr16:70887374-71201367	Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
25	nsv916150	chr16:70907468-71167265	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
26	nsv1063878	chr16:70914539-71201367	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Bivalent Enhancer Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
27	nsv542945	chr16:70914539-71201367	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
28	nsv533450	chr16:70929925-71196477	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	nsv906891	chr16:70933934-71150245	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
30	nsv1064990	chr16:70940019-71177033	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
31	nsv1060582	chr16:70940551-71168820	Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
32	nsv542946	chr16:70940551-71168820	Weak transcription Strong transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
33	nsv916989	chr16:70955169-71167265	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
34	nsv1065386	chr16:71000097-71135048	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
35	nsv1060754	chr16:71008303-71276778	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
36	nsv1059635	chr16:71038982-71191929	Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:53 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71021800-71055800	Weak transcription	Brain Angular Gyrus	brain
2	chr16:71039400-71048600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr16:71039600-71046400	Weak transcription	Brain Anterior Caudate	brain
4	chr16:71040400-71073800	Weak transcription	Pancreas	Pancrea
5	chr16:71040600-71047400	Weak transcription	Fetal Brain Female	brain
6	chr16:71041400-71047000	Weak transcription	Gastric	stomach
7	chr16:71042200-71046800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr16:71042800-71044400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr16:71042800-71044800	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr16:71042800-71045000	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr16:71042800-71046400	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr16:71042800-71048000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr16:71043000-71044600	Enhancers	H1 Cell Line	embryonic stem cell
14	chr16:71043000-71044600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr16:71043000-71044600	Enhancers	HMEC	breast
16	chr16:71043200-71044600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr16:71043200-71044600	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr16:71043200-71044600	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr16:71043200-71044600	Enhancers	iPS-18 Cell Line	embryonic stem cell
20	chr16:71043200-71044800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr16:71043200-71046800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr16:71043400-71044400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr16:71043400-71044400	Enhancers	HUES48 Cell Line	embryonic stem cell
24	chr16:71043400-71044400	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr16:71043400-71044400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
26	chr16:71043400-71044800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr16:71043400-71047600	Enhancers	Fetal Intestine Small	intestine
28	chr16:71043600-71044400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr16:71043600-71044400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr16:71043600-71044400	Enhancers	Primary hematopoietic stem cells	blood
31	chr16:71043600-71044400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr16:71043600-71044400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr16:71043600-71044400	Enhancers	Fetal Kidney	kidney
34	chr16:71043600-71044400	Enhancers	Fetal Stomach	stomach
35	chr16:71043600-71044400	Enhancers	Lung	lung
36	chr16:71043600-71044600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
37	chr16:71043600-71044600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr16:71043600-71044600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:71043600-71044600	Enhancers	Fetal Lung	lung
40	chr16:71043600-71044600	Enhancers	Fetal Muscle Trunk	muscle
41	chr16:71043600-71045400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
42	chr16:71043600-71046200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
43	chr16:71043800-71044400	Enhancers	Placenta	Placenta
44	chr16:71043800-71045000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr16:71043800-71045200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
46	chr16:71043800-71047600	Enhancers	Fetal Intestine Large	intestine
47	chr16:71044000-71044600	Enhancers	Fetal Muscle Leg	muscle
48	chr16:71044200-71044400	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
49	chr16:71044200-71044400	Flanking Active TSS	Dnd41	blood
50	chr16:71044200-71044600	Enhancers	NH-A	brain

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