Variant report

Variant	rs9923483
Chromosome Location	chr16:81767207-81767208
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:81767010..81769265-chr16:81770568..81772525,2	K562	blood:
2	chr16:81045576..81047236-chr16:81766244..81767798,2	K562	blood:
3	chr16:81765102..81768502-chr16:81769198..81773851,5	K562	blood:
4	chr16:81755538..81758445-chr16:81766898..81768515,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000261218	Chromatin interaction
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs4354928	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs9930614	0.90[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv523172	chr16:81758463-81778491	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv573363	chr16:81758463-81780565	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81764400-81768400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr16:81764600-81768400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:81764600-81768400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr16:81764600-81770200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
5	chr16:81764600-81771400	Weak transcription	Brain Hippocampus Middle	brain
6	chr16:81764600-81771400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr16:81764600-81771600	Weak transcription	Fetal Intestine Small	intestine
8	chr16:81764600-81771600	Weak transcription	Spleen	Spleen
9	chr16:81764800-81768000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr16:81764800-81768200	Weak transcription	A549	lung
11	chr16:81764800-81771000	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr16:81764800-81771200	Weak transcription	Primary T helper cells fromperipheralblood	blood
13	chr16:81764800-81771200	Weak transcription	Adipose Nuclei	Adipose
14	chr16:81764800-81771400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr16:81764800-81771400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr16:81765000-81771400	Weak transcription	Primary T cells from cord blood	blood
17	chr16:81765000-81771400	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr16:81765000-81771600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
19	chr16:81765600-81771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr16:81765600-81771400	Weak transcription	HUES64 Cell Line	embryonic stem cell
21	chr16:81765600-81771400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr16:81765800-81771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:81765800-81774000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr16:81766400-81771600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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