Variant report

Variant	rs4354928
Chromosome Location	chr16:81769072-81769073
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr16:81769005-81769115	HepG2	liver:	n/a	chr16:81769016-81769027 chr16:81769016-81769027 chr16:81769017-81769026

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81068849..81070576-chr16:81767313..81769356,2	K562	blood:
2	chr16:81767010..81769265-chr16:81770568..81772525,2	K562	blood:

Variant related genes	Relation type
PLCG2	TF binding region
ENSG00000261218	TF binding region
ENSG00000261218	Chromatin interaction
ENSG00000260213	Chromatin interaction
ENSG00000166454	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12928909	1.00[MEX][hapmap]
rs16955612	1.00[MEX][hapmap]
rs9923483	0.82[YRI][hapmap];1.00[AMR][1000 genomes]
rs9930295	1.00[MEX][hapmap]
rs9930614	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv523172	chr16:81758463-81778491	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv573363	chr16:81758463-81780565	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81764600-81770200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr16:81764600-81771400	Weak transcription	Brain Hippocampus Middle	brain
3	chr16:81764600-81771400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr16:81764600-81771600	Weak transcription	Fetal Intestine Small	intestine
5	chr16:81764600-81771600	Weak transcription	Spleen	Spleen
6	chr16:81764800-81771000	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:81764800-81771200	Weak transcription	Primary T helper cells fromperipheralblood	blood
8	chr16:81764800-81771200	Weak transcription	Adipose Nuclei	Adipose
9	chr16:81764800-81771400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr16:81764800-81771400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr16:81765000-81771400	Weak transcription	Primary T cells from cord blood	blood
12	chr16:81765000-81771400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr16:81765000-81771600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:81765600-81771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
15	chr16:81765600-81771400	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr16:81765600-81771400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr16:81765800-81771400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr16:81765800-81774000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr16:81766400-81771600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr16:81768200-81771200	Enhancers	A549	lung
21	chr16:81768800-81771400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr16:81768800-81771600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr16:81768800-81771600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
24	chr16:81768800-81771600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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