Variant report

Variant	rs12928909
Chromosome Location	chr16:81758463-81758464
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs16955612	1.00[MEX][hapmap]
rs4354928	1.00[MEX][hapmap]
rs9930295	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv523172	chr16:81758463-81778491	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv573363	chr16:81758463-81780565	Flanking Active TSS Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81749800-81763200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr16:81750400-81764200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:81751800-81763600	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr16:81752800-81763600	Weak transcription	HUVEC	blood vessel
5	chr16:81753000-81762800	Weak transcription	Duodenum Mucosa	Duodenum
6	chr16:81753600-81761000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr16:81754400-81760800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr16:81754800-81760600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr16:81757200-81763600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:81758000-81758800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr16:81758000-81759000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr16:81758200-81758600	Bivalent Enhancer	K562	blood
13	chr16:81758200-81759000	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr16:81758200-81759200	Enhancers	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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