Variant report

Variant	rs9930295
Chromosome Location	chr16:81824500-81824501
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81818658..81820858-chr16:81822107..81824530,2	K562	blood:
2	chr16:81811332..81815788-chr16:81822304..81826412,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197943	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs12928909	1.00[MEX][hapmap]
rs16955612	1.00[MEX][hapmap]
rs4354928	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81814400-81831800	Weak transcription	Adipose Nuclei	Adipose
2	chr16:81815200-81830000	Weak transcription	Esophagus	oesophagus
3	chr16:81815400-81830600	Weak transcription	Thymus	Thymus
4	chr16:81818000-81827800	Strong transcription	Monocytes-CD14+_RO01746	blood
5	chr16:81818000-81830400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr16:81818000-81845000	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr16:81818400-81826000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr16:81818600-81825400	Weak transcription	Fetal Intestine Small	intestine
9	chr16:81819000-81824600	Weak transcription	Gastric	stomach
10	chr16:81819200-81827800	Strong transcription	Primary monocytes fromperipheralblood	blood
11	chr16:81819800-81848800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr16:81820200-81825600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr16:81820400-81824600	Weak transcription	A549	lung
14	chr16:81820800-81829400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr16:81821000-81825800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
16	chr16:81821000-81826000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:81821000-81827800	Strong transcription	Primary hematopoietic stem cells short term culture	blood
18	chr16:81821000-81829600	Weak transcription	Placenta	Placenta
19	chr16:81821800-81824800	Genic enhancers	Primary B cells from cord blood	blood
20	chr16:81822000-81826000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr16:81822400-81829400	Weak transcription	Rectal Mucosa Donor 29	rectum
22	chr16:81823800-81825800	Genic enhancers	Spleen	Spleen
23	chr16:81823800-81826200	Strong transcription	Primary hematopoietic stem cells	blood
24	chr16:81824000-81824800	Strong transcription	Lung	lung
25	chr16:81824000-81825600	Genic enhancers	GM12878-XiMat	blood
26	chr16:81824200-81825000	Enhancers	Fetal Stomach	stomach
27	chr16:81824200-81827600	Strong transcription	Primary neutrophils fromperipheralblood	blood
28	chr16:81824400-81824600	Strong transcription	Duodenum Mucosa	Duodenum
29	chr16:81824400-81824800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr16:81824400-81825200	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr16:81824400-81825200	Enhancers	Colon Smooth Muscle	Colon
32	chr16:81824400-81825200	Enhancers	Fetal Kidney	kidney

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