Variant report

Variant	rs9924680
Chromosome Location	chr16:64857840-64857841
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11647632	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12149743	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12446421	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12446430	0.80[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12446445	0.87[ASN][1000 genomes]
rs12446489	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12933211	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4299178	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6498962	0.80[ASN][1000 genomes]
rs7191517	0.96[ASN][1000 genomes]
rs8046981	0.96[ASN][1000 genomes]
rs8053269	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv572899	chr16:64814244-64870659	Enhancers Weak transcription Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9924680	CDH5	cis	parietal	SCAN

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:64856800-64858200	Enhancers	Fetal Muscle Leg	muscle
2	chr16:64857400-64858200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
3	chr16:64857600-64858600	Weak transcription	Aorta	Aorta

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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