Variant report

Variant	rs9928252
Chromosome Location	chr16:80674641-80674642
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 121 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:116)

rs_ID	r²[population]
rs1109548	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1121650	1.00[EUR][1000 genomes]
rs1121652	1.00[EUR][1000 genomes]
rs13329835	0.90[ASN][1000 genomes]
rs13330440	1.00[EUR][1000 genomes]
rs13330445	1.00[EUR][1000 genomes]
rs13330499	1.00[EUR][1000 genomes]
rs13330767	1.00[EUR][1000 genomes]
rs13330810	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13331630	1.00[EUR][1000 genomes]
rs13331892	1.00[EUR][1000 genomes]
rs13331986	1.00[EUR][1000 genomes]
rs13332868	1.00[EUR][1000 genomes]
rs13333408	1.00[EUR][1000 genomes]
rs13333588	1.00[EUR][1000 genomes]
rs13333733	1.00[EUR][1000 genomes]
rs13334543	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13334600	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13335334	1.00[EUR][1000 genomes]
rs13335525	1.00[EUR][1000 genomes]
rs13335681	1.00[EUR][1000 genomes]
rs13336185	1.00[EUR][1000 genomes]
rs13336514	1.00[EUR][1000 genomes]
rs13336555	1.00[EUR][1000 genomes]
rs13336721	1.00[EUR][1000 genomes]
rs13336748	1.00[EUR][1000 genomes]
rs13336757	1.00[EUR][1000 genomes]
rs13336797	1.00[EUR][1000 genomes]
rs13337893	1.00[EUR][1000 genomes]
rs13338430	1.00[EUR][1000 genomes]
rs13339031	1.00[EUR][1000 genomes]
rs1982420	0.90[ASN][1000 genomes]
rs2167671	0.90[ASN][1000 genomes]
rs28435276	1.00[EUR][1000 genomes]
rs28439236	1.00[EUR][1000 genomes]
rs28453876	1.00[EUR][1000 genomes]
rs28484999	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28600122	1.00[EUR][1000 genomes]
rs28629992	1.00[EUR][1000 genomes]
rs28637533	1.00[EUR][1000 genomes]
rs28641984	1.00[EUR][1000 genomes]
rs28758756	1.00[EUR][1000 genomes]
rs28758801	1.00[EUR][1000 genomes]
rs28773800	1.00[EUR][1000 genomes]
rs28846148	1.00[EUR][1000 genomes]
rs28847920	1.00[EUR][1000 genomes]
rs28860586	1.00[EUR][1000 genomes]
rs28872224	1.00[EUR][1000 genomes]
rs56009700	1.00[EUR][1000 genomes]
rs56096652	1.00[EUR][1000 genomes]
rs56301423	1.00[EUR][1000 genomes]
rs57865804	1.00[EUR][1000 genomes]
rs59272180	1.00[EUR][1000 genomes]
rs60851276	1.00[EUR][1000 genomes]
rs7187578	1.00[EUR][1000 genomes]
rs7189369	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7194867	1.00[EUR][1000 genomes]
rs7201458	1.00[EUR][1000 genomes]
rs7201468	1.00[EUR][1000 genomes]
rs7206878	1.00[EUR][1000 genomes]
rs73583632	1.00[EUR][1000 genomes]
rs73583633	1.00[EUR][1000 genomes]
rs73583634	1.00[EUR][1000 genomes]
rs73583636	1.00[EUR][1000 genomes]
rs73583637	1.00[EUR][1000 genomes]
rs73583639	1.00[EUR][1000 genomes]
rs73583641	1.00[EUR][1000 genomes]
rs73583645	1.00[EUR][1000 genomes]
rs73592214	1.00[EUR][1000 genomes]
rs73592230	1.00[EUR][1000 genomes]
rs73592249	1.00[EUR][1000 genomes]
rs73592251	1.00[EUR][1000 genomes]
rs73592252	1.00[EUR][1000 genomes]
rs73592253	1.00[EUR][1000 genomes]
rs73592254	1.00[EUR][1000 genomes]
rs73592255	1.00[EUR][1000 genomes]
rs74028340	1.00[EUR][1000 genomes]
rs74028351	1.00[EUR][1000 genomes]
rs74028355	1.00[EUR][1000 genomes]
rs74028361	1.00[EUR][1000 genomes]
rs74028362	1.00[EUR][1000 genomes]
rs74028365	1.00[EUR][1000 genomes]
rs8056731	0.90[ASN][1000 genomes]
rs8060464	1.00[EUR][1000 genomes]
rs8061127	1.00[EUR][1000 genomes]
rs873994	0.90[ASN][1000 genomes]
rs879843	0.90[ASN][1000 genomes]
rs9921238	1.00[EUR][1000 genomes]
rs9921314	1.00[EUR][1000 genomes]
rs9922776	1.00[EUR][1000 genomes]
rs9923568	1.00[EUR][1000 genomes]
rs9923974	1.00[EUR][1000 genomes]
rs9924545	1.00[EUR][1000 genomes]
rs9927905	1.00[EUR][1000 genomes]
rs9928159	1.00[EUR][1000 genomes]
rs9928160	1.00[EUR][1000 genomes]
rs9928723	1.00[EUR][1000 genomes]
rs9929914	1.00[EUR][1000 genomes]
rs9930172	1.00[EUR][1000 genomes]
rs9930510	1.00[EUR][1000 genomes]
rs9930675	1.00[EUR][1000 genomes]
rs9931563	1.00[EUR][1000 genomes]
rs9931732	1.00[EUR][1000 genomes]
rs9932584	1.00[EUR][1000 genomes]
rs9933028	1.00[EUR][1000 genomes]
rs9933317	1.00[EUR][1000 genomes]
rs9933575	1.00[EUR][1000 genomes]
rs9935562	1.00[EUR][1000 genomes]
rs9936109	1.00[EUR][1000 genomes]
rs9936704	1.00[EUR][1000 genomes]
rs9938384	1.00[EUR][1000 genomes]
rs9939159	1.00[EUR][1000 genomes]
rs9939945	1.00[EUR][1000 genomes]
rs9939967	1.00[EUR][1000 genomes]
rs9940133	1.00[EUR][1000 genomes]
rs9940999	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
2	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
3	nsv1057562	chr16:80650768-80675842	Strong transcription Weak transcription Active TSS Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1058764	chr16:80656966-80707848	Active TSS Flanking Active TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv1057357	chr16:80662770-80794945	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80646600-80687800	Weak transcription	Pancreas	Pancrea
2	chr16:80663200-80690200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr16:80664200-80675800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr16:80665400-80677200	Weak transcription	Gastric	stomach
5	chr16:80667400-80675200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr16:80667400-80690000	Weak transcription	Spleen	Spleen
7	chr16:80671400-80676200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr16:80674200-80675000	Weak transcription	Aorta	Aorta
9	chr16:80674400-80687800	Weak transcription	Hela-S3	cervix
10	chr16:80674400-80707600	Weak transcription	Placenta	Placenta

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