Variant report

Variant	rs9930255
Chromosome Location	chr16:48628486-48628487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:48626790..48629783-chr16:48630060..48632935,2	K562	blood:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12918232	0.84[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2047601	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2354580	0.82[AFR][1000 genomes];0.90[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3785138	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3826176	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4028695	0.85[AMR][1000 genomes]
rs4315324	0.80[AMR][1000 genomes]
rs6500392	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs6500393	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8046716	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8057605	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]

No data

Chromatin state (count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:48605000-48630200	Weak transcription	Spleen	Spleen
2	chr16:48612400-48630200	Weak transcription	Gastric	stomach
3	chr16:48618000-48631600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr16:48618200-48630400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr16:48618200-48640400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr16:48619200-48631800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr16:48621200-48631400	Weak transcription	Brain Angular Gyrus	brain
8	chr16:48622400-48632800	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr16:48622600-48632600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr16:48623400-48629000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr16:48623600-48629600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr16:48623600-48629800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
13	chr16:48624200-48628600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr16:48624400-48630600	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
15	chr16:48624400-48632200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
16	chr16:48624600-48628800	ZNF genes & repeats	GM12878-XiMat	blood
17	chr16:48624600-48630200	Weak transcription	Pancreas	Pancrea
18	chr16:48624800-48629600	Weak transcription	Ovary	ovary
19	chr16:48624800-48630200	Weak transcription	Lung	lung
20	chr16:48624800-48630200	Weak transcription	Skeletal Muscle Female	skeletal muscle
21	chr16:48625000-48630200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr16:48625200-48631400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr16:48625600-48630000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
24	chr16:48626200-48629800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
25	chr16:48626400-48630000	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr16:48626400-48630200	Weak transcription	Left Ventricle	heart
27	chr16:48626400-48631600	Weak transcription	Hela-S3	cervix
28	chr16:48626400-48640400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr16:48626600-48630000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
30	chr16:48627000-48629600	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr16:48627000-48630000	Weak transcription	Colon Smooth Muscle	Colon
32	chr16:48627200-48630200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr16:48627200-48630200	Weak transcription	Right Ventricle	heart
34	chr16:48627200-48630600	Weak transcription	Aorta	Aorta
35	chr16:48627200-48631600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
36	chr16:48627200-48631600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr16:48627200-48631600	Weak transcription	Osteobl	bone
38	chr16:48627400-48629600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:48627400-48629800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
40	chr16:48627400-48629800	Weak transcription	Primary T helper cells fromperipheralblood	blood
41	chr16:48627400-48629800	Weak transcription	Liver	Liver
42	chr16:48627400-48630000	Weak transcription	Primary T cells from cord blood	blood
43	chr16:48627400-48630000	Weak transcription	Adipose Nuclei	Adipose
44	chr16:48627400-48630000	Weak transcription	Fetal Heart	heart
45	chr16:48627400-48630200	Weak transcription	Duodenum Mucosa	Duodenum
46	chr16:48627400-48630200	Weak transcription	Rectal Mucosa Donor 29	rectum
47	chr16:48627400-48630200	Weak transcription	NHEK	skin
48	chr16:48627400-48630800	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr16:48627400-48631200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr16:48627400-48631400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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