Variant report

Variant	rs9935449
Chromosome Location	chr16:47974757-47974758
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs13336450	0.84[AFR][1000 genomes]
rs28415596	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421488	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7202593	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045787	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045788	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045934	1.00[AMR][1000 genomes]
rs8048023	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054600	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9921499	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9929891	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931056	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9939344	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv833218	chr16:47869819-48051745	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47973600-47975600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr16:47974000-47975400	Enhancers	Spleen	Spleen
3	chr16:47974600-47974800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr16:47974600-47980000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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