Variant report

Variant	rs8045934
Chromosome Location	chr16:47820430-47820431
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs13336450	0.82[AFR][1000 genomes]
rs1985323	0.85[YRI][hapmap]
rs28415596	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28421488	1.00[AMR][1000 genomes]
rs6500353	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs6500354	0.82[AFR][1000 genomes]
rs7202593	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045787	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8045788	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8048023	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8054600	1.00[AMR][1000 genomes]
rs8063586	0.81[AFR][1000 genomes]
rs9921499	1.00[AMR][1000 genomes]
rs9926879	1.00[YRI][hapmap]
rs9929891	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9931056	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9935449	1.00[AMR][1000 genomes]
rs9939344	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv520355	chr16:47424828-48164777	Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv525976	chr16:47583872-48035026	Strong transcription Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
3	nsv428657	chr16:47748036-47913816	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1055833	chr16:47776838-47875609	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47819000-47821400	Enhancers	Fetal Brain Male	brain
2	chr16:47820400-47822200	Weak transcription	Fetal Brain Female	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links