Variant report

Variant	rs993719
Chromosome Location	chr11:83868953-83868954
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1584853	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1584854	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1598073	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1670683	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1670685	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1793032	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1793034	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6592172	1.00[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs72951862	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72951864	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72951873	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72951874	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv1051279	chr11:83818647-83872815	Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83867800-83872000	Weak transcription	Aorta	Aorta
2	chr11:83867800-83872200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:83867800-83872200	Weak transcription	Brain Substantia Nigra	brain
4	chr11:83867800-83873800	Weak transcription	Brain Cingulate Gyrus	brain
5	chr11:83868400-83869000	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr11:83868600-83869000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr11:83868600-83869000	Enhancers	Brain Anterior Caudate	brain
8	chr11:83868800-83874000	Weak transcription	Brain Angular Gyrus	brain
9	chr11:83868800-83884200	Weak transcription	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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