Variant report

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10792739	0.85[EUR][1000 genomes]
rs1160817	1.00[CEU][hapmap]
rs1160818	1.00[CEU][hapmap]
rs1304480	1.00[CEU][hapmap]
rs1384748	1.00[CEU][hapmap]
rs1483387	1.00[CEU][hapmap]
rs1483388	1.00[CEU][hapmap]
rs1584853	1.00[CEU][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1584854	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1586143	1.00[CEU][hapmap]
rs1598073	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1601094	1.00[CEU][hapmap]
rs1601096	1.00[CEU][hapmap]
rs1670683	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1793032	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1793034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1817515	1.00[CEU][hapmap]
rs2086741	1.00[CEU][hapmap]
rs2170707	1.00[CEU][hapmap]
rs2220085	1.00[CEU][hapmap]
rs2449575	1.00[CEU][hapmap]
rs2514165	1.00[CEU][hapmap]
rs2514166	1.00[CEU][hapmap]
rs2514167	1.00[CEU][hapmap]
rs2514171	1.00[CEU][hapmap]
rs2853026	1.00[CEU][hapmap]
rs6592172	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs72951862	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72951864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72951873	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs72951874	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7933909	1.00[CEU][hapmap]
rs993719	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv898029	chr11:83717887-83939591	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83889800-83900400	Weak transcription	H1 Cell Line	embryonic stem cell

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