Variant report

Variant	rs2514171
Chromosome Location	chr11:83701342-83701343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs1160817	1.00[CEU][hapmap]
rs1160818	1.00[CEU][hapmap]
rs1304480	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1351728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1384748	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1471687	1.00[CEU][hapmap]
rs1483385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1483387	1.00[CEU][hapmap]
rs1483388	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1584853	1.00[CEU][hapmap]
rs1584854	1.00[CEU][hapmap]
rs1586143	1.00[CEU][hapmap]
rs1598073	1.00[CEU][hapmap]
rs1599914	1.00[CEU][hapmap]
rs1601094	1.00[CEU][hapmap]
rs1601096	1.00[CEU][hapmap]
rs1670685	1.00[CEU][hapmap]
rs1817515	1.00[CEU][hapmap]
rs2086741	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170707	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2220085	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2374467	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449575	1.00[CEU][hapmap]
rs2449592	1.00[CEU][hapmap]
rs2449594	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514144	1.00[CEU][hapmap]
rs2514146	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514165	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514166	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514167	1.00[CEU][hapmap];0.95[EUR][1000 genomes]
rs2853026	1.00[CEU][hapmap]
rs72949864	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72949876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs790348	1.00[CEU][hapmap]
rs790351	1.00[CEU][hapmap]
rs790367	1.00[CEU][hapmap]
rs790372	1.00[CEU][hapmap]
rs7933909	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83700600-83704600	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83700800-83701600	Enhancers	Fetal Stomach	stomach
3	chr11:83701000-83701600	Enhancers	Brain Anterior Caudate	brain
4	chr11:83701200-83701400	Enhancers	Brain Hippocampus Middle	brain
5	chr11:83701200-83701600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr11:83701200-83701600	Active TSS	Pancreatic Islets	Pancreatic Islet
7	chr11:83701200-83701800	Active TSS	Stomach Smooth Muscle	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links