Variant report

Variant	rs2374467
Chromosome Location	chr11:83716566-83716567
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs1304480	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1351728	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1384748	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1483385	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1483388	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2086741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2170707	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2220085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2249354	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2449594	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514146	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514165	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514166	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2514167	0.95[EUR][1000 genomes]
rs2514171	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949864	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72949876	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72949878	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv898026	chr11:83685801-83789540	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
5	esv1814410	chr11:83696133-83775326	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
6	esv1809938	chr11:83716145-83789540	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83714800-83723200	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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