Variant report

Variant	rs790367
Chromosome Location	chr11:83647923-83647924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:17231273..17231972-chr11:83647156..83648176,4	Hela-S3	cervix:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs1160817	1.00[CEU][hapmap]
rs1160818	1.00[CEU][hapmap]
rs1304480	1.00[CEU][hapmap]
rs1384748	1.00[CEU][hapmap]
rs1471687	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs1483387	1.00[CEU][hapmap]
rs1483388	1.00[CEU][hapmap]
rs1586143	1.00[CEU][hapmap]
rs1599914	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs1601094	1.00[CEU][hapmap]
rs1601096	1.00[CEU][hapmap]
rs1817515	1.00[CEU][hapmap]
rs2086741	1.00[CEU][hapmap]
rs2170707	1.00[CEU][hapmap]
rs2220085	1.00[CEU][hapmap]
rs2220087	0.84[EUR][1000 genomes]
rs2449575	1.00[CEU][hapmap]
rs2449587	0.85[EUR][1000 genomes]
rs2449591	0.85[EUR][1000 genomes]
rs2449592	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs2449594	1.00[CEU][hapmap]
rs2514144	1.00[CEU][hapmap]
rs2514146	1.00[CEU][hapmap]
rs2514165	1.00[CEU][hapmap]
rs2514166	1.00[CEU][hapmap]
rs2514167	1.00[CEU][hapmap]
rs2514171	1.00[CEU][hapmap]
rs2853026	1.00[CEU][hapmap]
rs59236932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59582831	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61256660	0.83[AFR][1000 genomes]
rs73508261	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508263	1.00[AFR][1000 genomes]
rs73508265	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508269	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508270	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508279	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508280	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508281	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508283	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508289	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508292	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508293	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73508294	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73509808	0.83[AFR][1000 genomes]
rs790348	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs790351	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs790368	0.93[EUR][1000 genomes]
rs790371	0.85[EUR][1000 genomes]
rs790372	1.00[CEU][hapmap];0.85[EUR][1000 genomes]
rs7933909	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv555608	chr11:83633189-83651102	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83629800-83661800	Weak transcription	Brain Cingulate Gyrus	brain
2	chr11:83634600-83649400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:83639400-83649600	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:83639600-83659400	Weak transcription	Ovary	ovary

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