Variant report

Variant	rs2220087
Chromosome Location	chr11:83664268-83664269
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs1471687	0.84[EUR][1000 genomes]
rs1599914	0.84[EUR][1000 genomes]
rs2449587	0.84[EUR][1000 genomes]
rs2449591	0.84[EUR][1000 genomes]
rs2449592	0.84[EUR][1000 genomes]
rs790348	0.84[EUR][1000 genomes]
rs790351	0.84[EUR][1000 genomes]
rs790367	0.84[EUR][1000 genomes]
rs790371	0.84[EUR][1000 genomes]
rs790372	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898025	chr11:83658909-83796678	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv1039924	chr11:83662904-83993497	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv541102	chr11:83662904-83993497	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:83662600-83676200	Weak transcription	Brain Angular Gyrus	brain
2	chr11:83662800-83667800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr11:83663000-83675800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:83663000-83676000	Weak transcription	Brain Substantia Nigra	brain
5	chr11:83663200-83676000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr11:83663400-83665600	Weak transcription	Fetal Lung	lung
7	chr11:83663400-83675600	Weak transcription	Brain Hippocampus Middle	brain
8	chr11:83664000-83664600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr11:83664000-83666400	Weak transcription	Gastric	stomach
10	chr11:83664200-83664400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr11:83664200-83664400	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr11:83664200-83664600	Enhancers	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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