Variant report

Variant	rs9942413
Chromosome Location	chr5:43398719-43398720
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs11741797	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11951515	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs13161494	0.90[ASN][1000 genomes]
rs13187876	0.90[ASN][1000 genomes]
rs2330243	0.90[ASN][1000 genomes]
rs3756416	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4866741	0.90[ASN][1000 genomes]
rs4866742	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4866826	0.85[ASN][1000 genomes]
rs6860073	0.87[EUR][1000 genomes]
rs6883936	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7445066	0.90[ASN][1000 genomes]
rs754527	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7701642	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7704588	0.85[ASN][1000 genomes]
rs7706402	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9763006	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs9942413	NNT	cis	cerebellar cortex	BrainEAC
rs9942413	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397000-43404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:43397400-43402000	Weak transcription	Gastric	stomach
3	chr5:43397400-43402800	Weak transcription	Stomach Mucosa	stomach
4	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:43397600-43401200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr5:43397600-43402000	Weak transcription	Pancreas	Pancrea
7	chr5:43397600-43402000	Weak transcription	A549	lung
8	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
9	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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