Variant report

Variant	rs6860073
Chromosome Location	chr5:43403853-43403854
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43402066..43404544-chr5:43469955..43473241,3	MCF-7	breast:
2	chr5:43396606..43399340-chr5:43402380..43404106,3	K562	blood:
3	chr5:43398637..43404143-chr5:43481703..43486799,11	MCF-7	breast:
4	chr5:43402174..43404141-chr5:43482828..43485668,2	K562	blood:

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000151882	Chromatin interaction

rs_ID	r²[population]
rs10512825	0.81[ASN][1000 genomes]
rs10512827	0.86[ASN][1000 genomes]
rs10512828	0.86[ASN][1000 genomes]
rs10805672	0.81[ASN][1000 genomes]
rs10805673	0.82[ASN][1000 genomes]
rs10805674	0.82[ASN][1000 genomes]
rs10805675	0.86[ASN][1000 genomes]
rs10941621	0.81[ASN][1000 genomes]
rs10941622	0.81[ASN][1000 genomes]
rs10941623	0.81[ASN][1000 genomes]
rs10941628	0.81[ASN][1000 genomes]
rs10941630	0.82[ASN][1000 genomes]
rs10941631	0.86[ASN][1000 genomes]
rs10941632	0.86[ASN][1000 genomes]
rs11738086	0.82[ASN][1000 genomes]
rs11739009	0.81[ASN][1000 genomes]
rs11739665	0.81[ASN][1000 genomes]
rs11741246	0.81[ASN][1000 genomes]
rs11741797	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11742171	0.82[ASN][1000 genomes]
rs11742712	0.81[ASN][1000 genomes]
rs11743633	0.81[ASN][1000 genomes]
rs11747834	0.81[ASN][1000 genomes]
rs11950040	0.86[ASN][1000 genomes]
rs11950448	0.82[ASN][1000 genomes]
rs11951515	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11951584	0.82[ASN][1000 genomes]
rs11956635	0.86[ASN][1000 genomes]
rs11956936	0.86[ASN][1000 genomes]
rs11956988	0.86[ASN][1000 genomes]
rs11960415	0.86[ASN][1000 genomes]
rs12109933	0.86[ASN][1000 genomes]
rs12189016	0.81[ASN][1000 genomes]
rs12189447	0.81[ASN][1000 genomes]
rs12513864	0.86[ASN][1000 genomes]
rs12514393	0.81[ASN][1000 genomes]
rs12514399	0.81[ASN][1000 genomes]
rs12515072	0.81[ASN][1000 genomes]
rs12516435	0.82[ASN][1000 genomes]
rs12517362	0.83[ASN][1000 genomes]
rs12518032	0.81[ASN][1000 genomes]
rs12518127	0.86[ASN][1000 genomes]
rs12520012	0.81[ASN][1000 genomes]
rs12520895	0.86[ASN][1000 genomes]
rs12522178	0.81[ASN][1000 genomes]
rs13659	0.81[ASN][1000 genomes]
rs1545753	0.81[ASN][1000 genomes]
rs1548097	0.81[ASN][1000 genomes]
rs1564196	0.81[ASN][1000 genomes]
rs1564197	0.81[ASN][1000 genomes]
rs2126948	0.81[ASN][1000 genomes]
rs2126949	0.81[ASN][1000 genomes]
rs2169781	0.81[ASN][1000 genomes]
rs2330242	0.86[ASN][1000 genomes]
rs35239179	0.81[ASN][1000 genomes]
rs3733769	0.81[ASN][1000 genomes]
rs3756416	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4050485	0.81[ASN][1000 genomes]
rs4320264	0.81[ASN][1000 genomes]
rs4373285	0.81[ASN][1000 genomes]
rs4574553	0.81[ASN][1000 genomes]
rs4591755	0.81[ASN][1000 genomes]
rs4866737	0.81[ASN][1000 genomes]
rs4866738	0.81[ASN][1000 genomes]
rs4866742	0.84[EUR][1000 genomes]
rs4866813	0.81[ASN][1000 genomes]
rs4866820	0.82[ASN][1000 genomes]
rs4866821	0.82[ASN][1000 genomes]
rs4866822	0.82[ASN][1000 genomes]
rs4866824	0.82[ASN][1000 genomes]
rs4866825	0.82[ASN][1000 genomes]
rs55759097	0.86[ASN][1000 genomes]
rs55759722	0.82[ASN][1000 genomes]
rs55794239	0.81[ASN][1000 genomes]
rs56071328	0.81[ASN][1000 genomes]
rs56114604	0.81[ASN][1000 genomes]
rs56185290	0.82[ASN][1000 genomes]
rs57066570	0.81[ASN][1000 genomes]
rs57401732	0.81[ASN][1000 genomes]
rs58358642	0.82[ASN][1000 genomes]
rs58679159	0.81[ASN][1000 genomes]
rs58966636	0.82[ASN][1000 genomes]
rs59078439	0.81[ASN][1000 genomes]
rs59625262	0.82[ASN][1000 genomes]
rs59814709	0.82[ASN][1000 genomes]
rs60445501	0.81[ASN][1000 genomes]
rs61627503	0.86[ASN][1000 genomes]
rs66691321	0.81[ASN][1000 genomes]
rs67497876	0.81[ASN][1000 genomes]
rs67620667	0.86[ASN][1000 genomes]
rs67651757	0.81[ASN][1000 genomes]
rs67817333	0.81[ASN][1000 genomes]
rs6814	0.81[ASN][1000 genomes]
rs6863246	0.82[ASN][1000 genomes]
rs6867954	0.86[ASN][1000 genomes]
rs6883936	0.85[EUR][1000 genomes]
rs6886499	0.86[ASN][1000 genomes]
rs6887351	0.82[ASN][1000 genomes]
rs754527	0.86[EUR][1000 genomes]
rs7701642	0.82[EUR][1000 genomes]
rs7706402	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7708779	0.82[ASN][1000 genomes]
rs7714027	0.86[ASN][1000 genomes]
rs7720165	0.81[ASN][1000 genomes]
rs7720681	0.84[ASN][1000 genomes]
rs7727047	0.89[ASN][1000 genomes]
rs9763006	0.85[EUR][1000 genomes]
rs9790987	0.81[ASN][1000 genomes]
rs9942413	0.87[EUR][1000 genomes]

SNP	Gene	Cis/trans	Tissue	Source
rs6860073	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43397000-43404000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr5:43397400-43410200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:43397600-43409400	Weak transcription	Colonic Mucosa	Colon
4	chr5:43398000-43409000	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr5:43398000-43409400	Weak transcription	Rectal Mucosa Donor 29	rectum
6	chr5:43402200-43409000	Weak transcription	Duodenum Mucosa	Duodenum
7	chr5:43402200-43409000	Weak transcription	Pancreas	Pancrea
8	chr5:43402200-43420200	Weak transcription	Gastric	stomach
9	chr5:43402400-43404000	Weak transcription	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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