Variant report

Variant	rs56114604
Chromosome Location	chr5:43311165-43311166
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:43119390..43122399-chr5:43308571..43311731,3	MCF-7	breast:
2	chr5:43308985..43311687-chr5:43479244..43481066,2	MCF-7	breast:
3	chr5:43309580..43311517-chr5:43483460..43485441,3	K562	blood:
4	chr5:43307930..43311454-chr5:43482936..43485926,4	MCF-7	breast:
5	chr5:43063526..43065566-chr5:43309801..43312306,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000249492	Chromatin interaction
ENSG00000151881	Chromatin interaction
ENSG00000172262	Chromatin interaction

Extended variants
information (count: 157 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:154)

rs_ID	r²[population]
rs10039048	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10039617	0.90[EUR][1000 genomes]
rs10512825	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10512827	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10512828	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10805671	0.81[EUR][1000 genomes]
rs10805672	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10805673	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10805674	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10805675	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10941620	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10941621	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941622	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941623	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10941628	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10941630	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10941631	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10941632	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11738086	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11739009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11739665	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11740128	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11741246	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11741797	0.86[ASN][1000 genomes]
rs11742171	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11742712	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11743622	0.86[EUR][1000 genomes]
rs11743633	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11746629	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11747105	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11747834	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11950040	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11950448	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11951515	0.86[ASN][1000 genomes]
rs11951584	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11956635	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11956936	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11956988	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11960415	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12109933	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12189016	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12189447	0.99[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12513864	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12514393	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12514399	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12515072	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12516435	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12517362	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12518032	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12518127	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12519554	0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12520012	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12520895	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12522178	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13187876	0.83[EUR][1000 genomes]
rs13659	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1545753	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1548097	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1564196	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1564197	0.98[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1564198	0.86[EUR][1000 genomes]
rs2086133	0.81[EUR][1000 genomes]
rs2126947	0.83[EUR][1000 genomes]
rs2126948	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2126949	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2169781	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2330150	0.85[EUR][1000 genomes]
rs2330242	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35231094	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35239179	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3733768	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs3733769	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3756416	0.86[ASN][1000 genomes]
rs4050485	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4288122	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4320264	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4373285	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4395639	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4443425	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4443426	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4574553	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4591755	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4866734	0.80[EUR][1000 genomes]
rs4866737	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866738	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866741	0.82[EUR][1000 genomes]
rs4866813	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4866820	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866821	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866822	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866824	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866825	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866826	0.86[EUR][1000 genomes]
rs55634155	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55647314	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55759097	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55759722	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55794239	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55800451	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55939301	0.82[ASN][1000 genomes]
rs55992392	0.97[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56023994	0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56029402	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56071328	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56185290	0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56206275	0.92[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57066570	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57392430	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57401732	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58358642	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58679159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58966636	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59078439	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59625262	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59814709	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60445501	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60826019	0.81[ASN][1000 genomes]
rs61627503	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6451684	0.89[EUR][1000 genomes]
rs66585077	0.85[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs66691321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs66914803	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67415672	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67497876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67620667	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs67651757	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67817333	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6814	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6860073	0.81[ASN][1000 genomes]
rs6863246	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6863360	0.92[EUR][1000 genomes]
rs6867954	0.88[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6886499	0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6887351	0.96[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6895805	0.84[EUR][1000 genomes]
rs6898398	0.91[EUR][1000 genomes]
rs7380703	0.95[ASN][1000 genomes]
rs7445066	0.84[EUR][1000 genomes]
rs7701391	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7704588	0.85[EUR][1000 genomes]
rs7706402	0.85[ASN][1000 genomes]
rs7708779	0.84[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7714027	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7714919	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7716091	0.86[EUR][1000 genomes]
rs7720165	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7720681	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7722781	0.86[EUR][1000 genomes]
rs7727047	0.85[ASN][1000 genomes]
rs7734293	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs922439	0.94[ASN][1000 genomes]
rs9292871	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9292874	0.85[EUR][1000 genomes]
rs9790987	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs56114604	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43288200-43312400	Weak transcription	Spleen	Spleen
2	chr5:43294200-43312400	Weak transcription	Thymus	Thymus
3	chr5:43295600-43311800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr5:43297400-43312200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr5:43297400-43312400	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr5:43297600-43311800	Weak transcription	Hela-S3	cervix
7	chr5:43298800-43311600	Weak transcription	Colon Smooth Muscle	Colon
8	chr5:43298800-43312400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr5:43299000-43312000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr5:43299000-43312200	Weak transcription	Rectal Smooth Muscle	rectum
11	chr5:43299000-43312400	Weak transcription	Right Ventricle	heart
12	chr5:43299400-43311800	Weak transcription	HSMM	muscle
13	chr5:43299400-43312600	Weak transcription	Placenta	Placenta
14	chr5:43300200-43311800	Weak transcription	Fetal Stomach	stomach
15	chr5:43300400-43312200	Weak transcription	Esophagus	oesophagus
16	chr5:43300400-43312200	Weak transcription	Fetal Muscle Leg	muscle
17	chr5:43300400-43312200	Weak transcription	Fetal Thymus	thymus
18	chr5:43300400-43312400	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr5:43300400-43312400	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr5:43300800-43312000	Weak transcription	Fetal Muscle Trunk	muscle
21	chr5:43301000-43312000	Weak transcription	Primary B cells from peripheral blood	blood
22	chr5:43301000-43312200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:43302000-43311600	Weak transcription	NH-A	brain
24	chr5:43303000-43312000	Weak transcription	Primary hematopoietic stem cells	blood
25	chr5:43303400-43312800	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr5:43303600-43311800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
27	chr5:43303800-43312200	Weak transcription	Primary B cells from cord blood	blood
28	chr5:43304400-43312200	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr5:43304800-43311800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr5:43305000-43311800	Weak transcription	Osteobl	bone
31	chr5:43305400-43311800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
32	chr5:43305600-43312200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr5:43306000-43312800	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr5:43306400-43312600	Transcr. at gene 5' and 3'	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr5:43306400-43312600	Transcr. at gene 5' and 3'	Primary hematopoietic stem cells short term culture	blood
36	chr5:43306600-43311800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
37	chr5:43306600-43312200	Weak transcription	Primary T cells fromperipheralblood	blood
38	chr5:43306600-43312200	Weak transcription	Brain Substantia Nigra	brain
39	chr5:43306800-43311800	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr5:43306800-43312000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
41	chr5:43307600-43312800	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr5:43307800-43313400	Transcr. at gene 5' and 3'	Dnd41	blood
43	chr5:43308200-43312600	Transcr. at gene 5' and 3'	HMEC	breast
44	chr5:43308600-43312000	Enhancers	Fetal Intestine Small	intestine
45	chr5:43309200-43311200	Transcr. at gene 5' and 3'	Foreskin Keratinocyte Primary Cells skin02	Skin
46	chr5:43309200-43312400	Transcr. at gene 5' and 3'	HUES64 Cell Line	embryonic stem cell
47	chr5:43309200-43312600	Transcr. at gene 5' and 3'	iPS-20b Cell Line	embryonic stem cell
48	chr5:43309400-43311200	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr5:43309400-43311200	Enhancers	Small Intestine	intestine
50	chr5:43309400-43311600	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links