Variant report

Variant	rs7380703
Chromosome Location	chr5:43347344-43347345
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114947.1.1-5	chr5:43347332-43347440	NONHSAT101308

Extended variants
information (count: 133 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:130)

rs_ID	r²[population]
rs10512825	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs10512827	0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10512828	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10805672	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs10805673	0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10805674	0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10805675	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10941620	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs10941621	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs10941622	0.95[ASN][1000 genomes]
rs10941623	0.95[ASN][1000 genomes]
rs10941628	0.97[ASN][1000 genomes]
rs10941630	0.91[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs10941631	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs10941632	0.88[ASN][1000 genomes]
rs11738086	0.96[ASN][1000 genomes]
rs11739009	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11739665	0.95[ASN][1000 genomes]
rs11740128	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs11741246	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs11741797	0.91[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs11742171	0.89[CHB][hapmap];0.81[JPT][hapmap];0.91[ASN][1000 genomes]
rs11742712	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11743633	0.90[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs11746629	0.90[ASN][1000 genomes]
rs11747105	0.92[ASN][1000 genomes]
rs11747834	0.97[ASN][1000 genomes]
rs11950040	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs11950448	0.90[CHB][hapmap];0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs11951515	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs11951584	0.96[ASN][1000 genomes]
rs11956635	0.90[CHB][hapmap];0.80[JPT][hapmap];0.88[ASN][1000 genomes]
rs11956936	0.88[ASN][1000 genomes]
rs11956988	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs11960415	0.88[ASN][1000 genomes]
rs12109933	0.88[ASN][1000 genomes]
rs12189016	0.97[ASN][1000 genomes]
rs12189447	0.97[ASN][1000 genomes]
rs12513864	0.88[ASN][1000 genomes]
rs12514393	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs12514399	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12515072	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12516435	0.94[ASN][1000 genomes]
rs12517362	0.88[ASN][1000 genomes]
rs12518032	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs12518127	0.90[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs12519554	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs12520012	0.95[ASN][1000 genomes]
rs12520895	0.88[ASN][1000 genomes]
rs12522178	0.95[ASN][1000 genomes]
rs13659	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs1545753	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs1548097	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs1564196	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs1564197	1.00[CHB][hapmap];0.93[JPT][hapmap];0.97[ASN][1000 genomes]
rs17244818	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs2126948	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs2126949	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs2169781	0.95[ASN][1000 genomes]
rs2330242	0.88[ASN][1000 genomes]
rs35231094	0.90[ASN][1000 genomes]
rs35239179	0.95[ASN][1000 genomes]
rs3733769	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs3756416	0.90[CHB][hapmap];0.81[JPT][hapmap];0.83[ASN][1000 genomes]
rs4050485	0.95[ASN][1000 genomes]
rs4288122	0.91[CHB][hapmap];0.93[JPT][hapmap];0.90[ASN][1000 genomes]
rs4320264	0.97[ASN][1000 genomes]
rs4373285	0.95[ASN][1000 genomes]
rs4395639	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs4443425	0.88[ASN][1000 genomes]
rs4443426	0.90[CHB][hapmap];0.84[JPT][hapmap];0.87[ASN][1000 genomes]
rs4574553	0.97[ASN][1000 genomes]
rs4591755	0.97[ASN][1000 genomes]
rs4866737	0.95[ASN][1000 genomes]
rs4866738	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs4866813	0.95[ASN][1000 genomes]
rs4866818	1.00[CHB][hapmap];0.93[JPT][hapmap]
rs4866820	0.91[CHB][hapmap];0.93[JPT][hapmap];0.94[ASN][1000 genomes]
rs4866821	0.94[ASN][1000 genomes]
rs4866822	0.88[CHB][hapmap];0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4866824	0.85[JPT][hapmap];0.91[ASN][1000 genomes]
rs4866825	0.91[ASN][1000 genomes]
rs55634155	0.92[ASN][1000 genomes]
rs55647314	0.83[ASN][1000 genomes]
rs55759097	0.88[ASN][1000 genomes]
rs55759722	0.94[ASN][1000 genomes]
rs55794239	0.95[ASN][1000 genomes]
rs55800451	0.90[ASN][1000 genomes]
rs55939301	0.84[ASN][1000 genomes]
rs55992392	0.92[ASN][1000 genomes]
rs56023994	0.83[ASN][1000 genomes]
rs56029402	0.90[ASN][1000 genomes]
rs56071328	0.97[ASN][1000 genomes]
rs56114604	0.95[ASN][1000 genomes]
rs56185290	0.94[ASN][1000 genomes]
rs56206275	0.92[ASN][1000 genomes]
rs57066570	0.92[ASN][1000 genomes]
rs57392430	0.90[ASN][1000 genomes]
rs57401732	0.95[ASN][1000 genomes]
rs58358642	0.94[ASN][1000 genomes]
rs58679159	0.95[ASN][1000 genomes]
rs58966636	0.91[ASN][1000 genomes]
rs59078439	0.97[ASN][1000 genomes]
rs59625262	0.91[ASN][1000 genomes]
rs59814709	0.91[ASN][1000 genomes]
rs60445501	0.95[ASN][1000 genomes]
rs60826019	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61627503	0.88[ASN][1000 genomes]
rs66585077	0.90[ASN][1000 genomes]
rs66691321	0.95[ASN][1000 genomes]
rs66914803	0.91[ASN][1000 genomes]
rs67415672	0.88[ASN][1000 genomes]
rs67497876	0.95[ASN][1000 genomes]
rs67620667	0.88[ASN][1000 genomes]
rs67651757	0.95[ASN][1000 genomes]
rs67817333	0.95[ASN][1000 genomes]
rs6814	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]
rs6863246	0.96[ASN][1000 genomes]
rs6867954	0.88[ASN][1000 genomes]
rs6886499	0.89[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs6887351	0.90[CHB][hapmap];0.93[JPT][hapmap];0.96[ASN][1000 genomes]
rs7706402	0.82[ASN][1000 genomes]
rs7708779	0.86[JPT][hapmap];0.91[ASN][1000 genomes]
rs7714027	0.91[CHB][hapmap];0.81[JPT][hapmap];0.88[ASN][1000 genomes]
rs7720165	1.00[CHB][hapmap];0.86[JPT][hapmap];0.95[ASN][1000 genomes]
rs7720681	0.90[CHB][hapmap];0.81[JPT][hapmap];0.86[ASN][1000 genomes]
rs7727047	0.90[CHB][hapmap];0.81[JPT][hapmap];0.85[ASN][1000 genomes]
rs7734293	1.00[CHB][hapmap];0.90[ASN][1000 genomes]
rs922439	0.81[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.93[YRI][hapmap];0.86[AFR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9790987	1.00[CHB][hapmap];0.93[JPT][hapmap];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7380703	NNT	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43347200-43349400	Enhancers	HepG2	liver
2	chr5:43347200-43349800	Enhancers	Fetal Intestine Large	intestine

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