Variant report

Variant	rs67415672
Chromosome Location	chr5:43287161-43287162
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:37)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:37 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr5:43286563-43288171	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr5:43286219-43288215	H1-hESC	embryonic stem cell:	n/a	n/a
3	POLR2A	chr5:43286630-43287388	H1-neurons	neurons:	n/a	n/a
4	POLR2A	chr5:43284787-43292154	K562	blood:	n/a	n/a
5	POLR2A	chr5:43286673-43287541	GM12878	blood:	n/a	n/a
6	POLR2A	chr5:43286548-43287918	GM12891	blood:	n/a	n/a
7	POLR2A	chr5:43286213-43289153	K562	blood:	n/a	n/a
8	POLR2A	chr5:43284759-43289759	HepG2	liver:	n/a	n/a
9	POLR2A	chr5:43285561-43289251	HepG2	liver:	n/a	n/a
10	POLR2A	chr5:43285678-43288190	A549	lung:	n/a	n/a
11	POLR2A	chr5:43284900-43292074	HepG2	liver:	n/a	n/a
12	POLR2A	chr5:43285373-43287718	SK-N-MC	brain:	n/a	n/a
13	POLR2A	chr5:43285987-43287626	GM12878	blood:	n/a	n/a
14	FOSL2	chr5:43285542-43288202	HepG2	liver:	n/a	n/a
15	POLR2A	chr5:43285520-43288419	HepG2	liver:	n/a	n/a
16	NFATC1	chr5:43286739-43287194	GM12878	blood:	n/a	n/a
17	POLR2A	chr5:43286539-43288220	K562	blood:	n/a	n/a
18	POLR2A	chr5:43286182-43288228	PBDE	blood:	n/a	n/a
19	HEY1	chr5:43286042-43288237	HepG2	liver:	n/a	n/a
20	POLR2A	chr5:43286303-43288247	K562	blood:	n/a	n/a
21	CHD2	chr5:43286763-43287478	K562	blood:	n/a	n/a
22	POLR2A	chr5:43286268-43288253	K562	blood:	n/a	n/a
23	POLR2A	chr5:43286155-43288219	HL-60	blood:	n/a	n/a
24	POLR2A	chr5:43286190-43289185	HepG2	liver:	n/a	n/a
25	POLR2A	chr5:43286672-43287467	ECC-1	luminal epithelium:	n/a	n/a
26	POLR2A	chr5:43285092-43289217	HepG2	liver:	n/a	n/a
27	POLR2A	chr5:43286594-43288171	HepG2	liver:	n/a	n/a
28	POLR2A	chr5:43284491-43289202	GM12891	blood:	n/a	n/a
29	POLR2A	chr5:43286110-43288242	GM12878	blood:	n/a	n/a
30	MBD4	chr5:43286639-43287381	HepG2	liver:	n/a	n/a
31	NFATC1	chr5:43287121-43287536	GM12878	blood:	n/a	n/a
32	POLR2A	chr5:43286643-43287550	ECC-1	luminal epithelium:	n/a	n/a
33	POLR2A	chr5:43287120-43287426	K562	blood:	n/a	n/a
34	CHD2	chr5:43286585-43287393	HepG2	liver:	n/a	n/a
35	POLR2A	chr5:43286171-43288245	HL-60	blood:	n/a	n/a
36	POLR2A	chr5:43286715-43288211	HepG2	liver:	n/a	n/a
37	MBD4	chr5:43285040-43288076	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:43284931..43287832-chr5:43292804..43295687,2	MCF-7	breast:
2	chr5:43283692..43287264-chr5:43312626..43315083,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000261604	TF binding region
ENSG00000112972	Chromatin interaction

Extended variants
information (count: 153 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:148)

rs_ID	r²[population]
rs10039048	0.86[EUR][1000 genomes]
rs10039617	0.85[EUR][1000 genomes]
rs10462047	0.81[EUR][1000 genomes]
rs10462048	0.82[EUR][1000 genomes]
rs10512825	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512827	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512828	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10805671	0.84[EUR][1000 genomes]
rs10805672	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10805673	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10805674	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10805675	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10941620	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10941621	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941622	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941623	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10941628	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10941630	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10941631	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10941632	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11738086	0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11739009	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11739665	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11740128	0.93[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11741246	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11742171	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11742712	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11743622	0.82[EUR][1000 genomes]
rs11743633	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11746629	0.94[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11747105	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11747834	0.85[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11950040	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11950448	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11951584	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11956635	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11956936	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11956988	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11960415	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12109933	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12189016	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12189447	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12513864	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12514393	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12514399	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12515072	0.86[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12516435	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12517362	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12518032	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12518127	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12519554	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12520012	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12520895	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12522178	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13659	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1545753	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1548097	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1564196	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1564197	0.85[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1564198	0.82[EUR][1000 genomes]
rs2086133	0.85[EUR][1000 genomes]
rs2126948	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2126949	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2169781	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2330150	0.80[EUR][1000 genomes]
rs2330242	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs35231094	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35239179	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3733768	0.87[EUR][1000 genomes]
rs3733769	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4050485	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4288122	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4320264	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4373285	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4395639	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4443425	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4443426	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4574553	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4591755	0.87[AFR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4866734	0.83[EUR][1000 genomes]
rs4866737	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866738	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866813	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4866820	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4866821	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4866822	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866824	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866825	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4866826	0.81[EUR][1000 genomes]
rs55634155	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55647314	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55759097	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55759722	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55794239	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55800451	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs55820064	0.83[ASN][1000 genomes]
rs55939301	0.88[ASN][1000 genomes]
rs55992392	0.84[AFR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56023994	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56029402	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56071328	0.83[AFR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56114604	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56185290	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56206275	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56331753	0.83[ASN][1000 genomes]
rs57066570	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57392430	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57401732	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58358642	0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58679159	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58966636	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59078439	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs59625262	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs59814709	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60207549	0.81[EUR][1000 genomes]
rs60445501	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61627503	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6451684	0.85[EUR][1000 genomes]
rs66585077	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs66691321	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66914803	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67497876	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67620667	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs67651757	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs67817333	0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6814	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6863246	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6863360	0.87[EUR][1000 genomes]
rs6867954	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6886499	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6887351	0.83[AFR][1000 genomes];0.88[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6895805	0.87[EUR][1000 genomes]
rs6898398	0.87[EUR][1000 genomes]
rs7380703	0.88[ASN][1000 genomes]
rs7701391	0.87[EUR][1000 genomes]
rs7704588	0.80[EUR][1000 genomes]
rs7708779	0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7714027	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7714919	0.87[EUR][1000 genomes]
rs7716091	0.82[EUR][1000 genomes]
rs7720165	0.86[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7720681	0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7722781	0.82[EUR][1000 genomes]
rs7734293	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs922439	0.87[ASN][1000 genomes]
rs9292871	0.87[EUR][1000 genomes]
rs9292874	0.81[EUR][1000 genomes]
rs9790987	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023741	chr5:42768215-43348145	Flanking Active TSS Weak transcription Bivalent/Poised TSS Enhancers Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
2	nsv537737	chr5:42768215-43348145	Genic enhancers Enhancers Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	309 gene(s)	inside rSNPs	diseases
3	nsv1024636	chr5:42959979-43295782	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
4	nsv537739	chr5:42959979-43295782	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	283 gene(s)	inside rSNPs	diseases
5	nsv508352	chr5:43237830-43391062	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:122 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:43282800-43292800	Weak transcription	Hela-S3	cervix
2	chr5:43283400-43287200	Weak transcription	Aorta	Aorta
3	chr5:43283400-43287600	Weak transcription	NH-A	brain
4	chr5:43283600-43287600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr5:43284000-43287600	Weak transcription	NHEK	skin
6	chr5:43284200-43294000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr5:43284200-43309400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr5:43284400-43287200	Weak transcription	Primary B cells from peripheral blood	blood
9	chr5:43284600-43287800	Weak transcription	HepG2	liver
10	chr5:43284800-43287800	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr5:43284800-43289000	Weak transcription	Small Intestine	intestine
12	chr5:43285000-43287400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr5:43285000-43287800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr5:43285000-43288200	Strong transcription	A549	lung
15	chr5:43285000-43291400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:43285000-43291400	Weak transcription	Osteobl	bone
17	chr5:43285000-43293400	Weak transcription	Pancreas	Pancrea
18	chr5:43285000-43300800	Strong transcription	Cortex derived primary cultured neurospheres	brain
19	chr5:43285200-43287400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:43285200-43287400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr5:43285200-43294200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:43285400-43287200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr5:43285400-43287800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr5:43285400-43290400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
25	chr5:43285400-43291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr5:43285400-43291600	Weak transcription	Fetal Kidney	kidney
27	chr5:43285400-43292000	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr5:43285400-43292600	Weak transcription	Fetal Brain Male	brain
29	chr5:43285600-43287200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr5:43285600-43287200	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr5:43285600-43287400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr5:43285600-43287400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr5:43285600-43290200	Weak transcription	Colon Smooth Muscle	Colon
34	chr5:43285600-43291600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr5:43285600-43293400	Weak transcription	Colonic Mucosa	Colon
36	chr5:43285600-43300000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
37	chr5:43285600-43302000	Weak transcription	Pancreatic Islets	Pancreatic Islet
38	chr5:43285600-43302800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr5:43285800-43287400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
40	chr5:43285800-43289000	Strong transcription	Primary T cells from cord blood	blood
41	chr5:43285800-43291800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
42	chr5:43286200-43287400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr5:43286200-43288400	Strong transcription	Brain Germinal Matrix	brain
44	chr5:43286200-43288800	Strong transcription	HSMM	muscle
45	chr5:43286200-43291600	Weak transcription	Rectal Smooth Muscle	rectum
46	chr5:43286200-43295600	Strong transcription	HSMMtube	muscle
47	chr5:43286200-43298000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr5:43286200-43300600	Strong transcription	Fetal Intestine Large	intestine
49	chr5:43286400-43288200	Strong transcription	Brain Angular Gyrus	brain
50	chr5:43286400-43288200	Strong transcription	Fetal Stomach	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links