Variant report

Variant	rs9948445
Chromosome Location	chr18:29197047-29197048
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12458967	0.85[EUR][1000 genomes]
rs13381522	1.00[CEU][hapmap]
rs17740990	0.82[EUR][1000 genomes]
rs1791196	0.82[EUR][1000 genomes]
rs1791206	1.00[CEU][hapmap]
rs1900880	0.82[EUR][1000 genomes]
rs34683195	0.89[EUR][1000 genomes]
rs36204272	0.82[EUR][1000 genomes]
rs3764477	1.00[CEU][hapmap]
rs4799586	0.85[EUR][1000 genomes]
rs4799587	0.85[EUR][1000 genomes]
rs57844152	0.82[EUR][1000 genomes]
rs7245117	0.83[AFR][1000 genomes]
rs9797439	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29191000-29197200	Weak transcription	Fetal Intestine Small	intestine
2	chr18:29191200-29201400	Weak transcription	Fetal Brain Male	brain
3	chr18:29191400-29197200	Weak transcription	Primary hematopoietic stem cells	blood
4	chr18:29191400-29207000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:29191400-29207800	Weak transcription	Fetal Intestine Large	intestine
6	chr18:29191600-29205200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr18:29191800-29204800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
8	chr18:29191800-29207800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr18:29192200-29206200	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr18:29192400-29217400	Weak transcription	Left Ventricle	heart
11	chr18:29194800-29197200	Weak transcription	HUES48 Cell Line	embryonic stem cell
12	chr18:29194800-29205000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr18:29194800-29226800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr18:29195200-29204800	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr18:29195400-29205400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr18:29195600-29206000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
17	chr18:29196600-29197200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr18:29196800-29197800	Enhancers	GM12878-XiMat	blood
19	chr18:29197000-29197200	Enhancers	Duodenum Mucosa	Duodenum
20	chr18:29197000-29197200	Enhancers	Pancreatic Islets	Pancreatic Islet
21	chr18:29197000-29197400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr18:29197000-29197600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr18:29197000-29197600	Enhancers	Brain Anterior Caudate	brain
24	chr18:29197000-29205200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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