Variant report

Variant	rs17740990
Chromosome Location	chr18:29186781-29186782
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12458967	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12604279	1.00[JPT][hapmap]
rs13381522	1.00[CEU][hapmap];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1574501	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1667227	0.86[EUR][1000 genomes]
rs17740912	1.00[CHB][hapmap];0.97[ASN][1000 genomes]
rs1791185	0.93[EUR][1000 genomes]
rs1791190	0.93[EUR][1000 genomes]
rs1791196	1.00[EUR][1000 genomes]
rs1791206	1.00[CEU][hapmap]
rs1900880	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs36204272	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3764477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4799580	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4799586	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4799587	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs57844152	1.00[EUR][1000 genomes]
rs58616646	0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs73418122	0.89[EUR][1000 genomes]
rs875119	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs875120	1.00[CHB][hapmap];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9797439	0.93[EUR][1000 genomes]
rs9948445	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066692	chr18:28856066-29190505	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv543674	chr18:28856066-29190505	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv833615	chr18:29008396-29192976	Strong transcription Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
4	nsv576636	chr18:29146822-29190174	Enhancers Genic enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv909519	chr18:29172865-29330214	Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29180800-29191000	Weak transcription	Fetal Intestine Large	intestine
2	chr18:29185400-29191800	Enhancers	HepG2	liver
3	chr18:29185600-29186800	Enhancers	Pancreatic Islets	Pancreatic Islet
4	chr18:29186400-29187200	Weak transcription	Liver	Liver
5	chr18:29186600-29187400	Weak transcription	Pancreas	Pancrea
6	chr18:29186600-29190200	Weak transcription	Fetal Intestine Small	intestine

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