Variant report

Variant	rs9949102
Chromosome Location	chr18:44128048-44128049
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12956234	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17768374	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34175594	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34693070	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs41393146	0.99[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4890667	0.86[YRI][hapmap]
rs9945193	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9946967	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9947183	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9949302	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9956148	1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9964481	0.91[YRI][hapmap]
rs9967253	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs9949102	PSTPIP2	cis	lymphoblastoid	seeQTL

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44126600-44128200	Weak transcription	Fetal Stomach	stomach
2	chr18:44126600-44128800	Weak transcription	Colon Smooth Muscle	Colon
3	chr18:44126600-44130400	Weak transcription	Right Atrium	heart
4	chr18:44126600-44130600	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr18:44126600-44130600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr18:44126600-44130800	Weak transcription	Spleen	Spleen
7	chr18:44126600-44131200	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr18:44126600-44132200	Weak transcription	Rectal Smooth Muscle	rectum
9	chr18:44126600-44133800	Weak transcription	Brain Hippocampus Middle	brain
10	chr18:44126600-44133800	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr18:44126600-44134000	Weak transcription	Brain Angular Gyrus	brain
12	chr18:44126600-44135000	Weak transcription	Brain Cingulate Gyrus	brain
13	chr18:44126600-44137200	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr18:44126600-44139200	Weak transcription	Lung	lung
15	chr18:44126600-44143000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr18:44127800-44128200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr18:44128000-44129600	Enhancers	Stomach Smooth Muscle	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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