Variant report

Variant	rs9952232
Chromosome Location	chr18:40322969-40322970
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11873965	1.00[AMR][1000 genomes]
rs7232281	0.82[AMR][1000 genomes]
rs73480773	0.94[AMR][1000 genomes]
rs73951742	0.87[AMR][1000 genomes]
rs8084707	0.82[AMR][1000 genomes]
rs9947820	1.00[AMR][1000 genomes]
rs9948098	1.00[AMR][1000 genomes]
rs9950195	1.00[AMR][1000 genomes]
rs9955941	0.93[AMR][1000 genomes]
rs9960152	0.82[AMR][1000 genomes]
rs9964370	1.00[AMR][1000 genomes]
rs9965742	0.94[AMR][1000 genomes]
rs9966286	0.94[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40320800-40323000	Enhancers	HUES64 Cell Line	embryonic stem cell
2	chr18:40321600-40323800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:40322200-40323000	Enhancers	H1 Cell Line	embryonic stem cell
4	chr18:40322400-40323000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr18:40322400-40323000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
6	chr18:40322400-40323400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:40322400-40323600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
8	chr18:40322400-40323800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
9	chr18:40322400-40323800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
10	chr18:40322400-40323800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
11	chr18:40322400-40323800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
12	chr18:40322600-40323400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:40322600-40323600	Enhancers	Liver	Liver
14	chr18:40322600-40323600	Enhancers	Ovary	ovary
15	chr18:40322600-40323800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
16	chr18:40322800-40326800	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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