Variant report

Variant	rs9966286
Chromosome Location	chr18:40286919-40286920
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11873965	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7232281	0.88[AMR][1000 genomes]
rs73480773	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73951742	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs8084707	0.88[AMR][1000 genomes]
rs9947820	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9948098	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs9950195	0.94[AMR][1000 genomes]
rs9952232	0.94[AMR][1000 genomes]
rs9955941	0.88[AMR][1000 genomes]
rs9960152	0.88[AMR][1000 genomes]
rs9964370	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9965742	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40285200-40288200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr18:40286000-40287400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr18:40286400-40287200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr18:40286600-40287000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:40286600-40287000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr18:40286600-40288400	Enhancers	Dnd41	blood
7	chr18:40286800-40287000	Enhancers	HMEC	breast
8	chr18:40286800-40287400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr18:40286800-40287400	Enhancers	NHEK	skin
10	chr18:40286800-40288400	Weak transcription	ES-I3 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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