Variant report

Variant	rs9954819
Chromosome Location	chr18:24519872-24519873
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs28708644	1.00[EUR][1000 genomes]
rs7241492	1.00[EUR][1000 genomes]
rs73400728	1.00[EUR][1000 genomes]
rs9946015	1.00[EUR][1000 genomes]
rs9948442	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24503200-24520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr18:24505400-24527200	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr18:24508400-24529000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr18:24508600-24536800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr18:24518200-24522600	Weak transcription	Fetal Intestine Small	intestine
6	chr18:24518600-24520200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:24518800-24521600	Weak transcription	Psoas Muscle	Psoas
8	chr18:24519200-24520600	Weak transcription	Skeletal Muscle Female	skeletal muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links