Variant report

Variant	rs73400728
Chromosome Location	chr18:24503456-24503457
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs28708644	1.00[EUR][1000 genomes]
rs57287485	1.00[AMR][1000 genomes]
rs7241492	1.00[EUR][1000 genomes]
rs73398728	1.00[AMR][1000 genomes]
rs73400708	1.00[AMR][1000 genomes]
rs73400716	0.85[AMR][1000 genomes]
rs73400726	1.00[AMR][1000 genomes]
rs73400735	1.00[AMR][1000 genomes]
rs73400742	1.00[AMR][1000 genomes]
rs73400764	1.00[AMR][1000 genomes]
rs73400766	1.00[AMR][1000 genomes]
rs73400784	0.83[AMR][1000 genomes]
rs9946015	1.00[EUR][1000 genomes]
rs9948442	1.00[EUR][1000 genomes]
rs9954819	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833600	chr18:24473894-24681019	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv909472	chr18:24479960-24614192	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24500000-24503800	Weak transcription	Gastric	stomach
2	chr18:24500000-24506600	Weak transcription	Brain Substantia Nigra	brain
3	chr18:24500200-24504800	Weak transcription	Ovary	ovary
4	chr18:24502800-24503600	Weak transcription	Fetal Lung	lung
5	chr18:24503200-24503800	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr18:24503200-24504000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr18:24503200-24504800	Weak transcription	Fetal Stomach	stomach
8	chr18:24503200-24520800	Weak transcription	Cortex derived primary cultured neurospheres	brain
9	chr18:24503400-24504800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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