Variant report

Variant	rs9956052
Chromosome Location	chr18:45505835-45505836
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4940158	0.94[ASN][1000 genomes]
rs4940166	0.85[ASN][1000 genomes]
rs7505878	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv978736	chr18:45504781-45511894	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45501800-45510200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:45502200-45510000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:45502400-45507600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr18:45502600-45507200	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr18:45502600-45508000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr18:45503000-45506400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr18:45505000-45508600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr18:45505200-45506400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:45505200-45506600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr18:45505200-45506600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
11	chr18:45505200-45506600	Enhancers	Primary hematopoietic stem cells short term culture	blood
12	chr18:45505600-45506600	Enhancers	Placenta	Placenta
13	chr18:45505600-45507600	Weak transcription	HUES64 Cell Line	embryonic stem cell
14	chr18:45505800-45506000	Enhancers	iPS-18 Cell Line	embryonic stem cell
15	chr18:45505800-45506200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr18:45505800-45506400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr18:45505800-45507000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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