Variant report

Variant	rs4940158
Chromosome Location	chr18:45507746-45507747
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12956843	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12959824	0.89[EUR][1000 genomes]
rs4940166	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7237616	0.91[CEU][hapmap];0.97[GIH][hapmap];0.85[MEX][hapmap];0.97[TSI][hapmap];0.85[EUR][1000 genomes]
rs7505878	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8086080	0.86[EUR][1000 genomes]
rs8096094	0.89[EUR][1000 genomes]
rs9956052	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv978736	chr18:45504781-45511894	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
3	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45501800-45510200	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr18:45502200-45510000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr18:45502600-45508000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr18:45505000-45508600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr18:45506200-45508800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr18:45506200-45510200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr18:45506400-45508200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr18:45506600-45509600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr18:45507000-45508400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr18:45507000-45508400	Enhancers	iPS-18 Cell Line	embryonic stem cell
11	chr18:45507200-45508200	Enhancers	HUES48 Cell Line	embryonic stem cell
12	chr18:45507600-45507800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr18:45507600-45508200	Enhancers	iPS-20b Cell Line	embryonic stem cell
14	chr18:45507600-45508400	Enhancers	H1 Cell Line	embryonic stem cell
15	chr18:45507600-45508400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr18:45507600-45508400	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr18:45507600-45508400	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr18:45507600-45508600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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