Variant report

Variant	rs7237616
Chromosome Location	chr18:45523151-45523152
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12956843	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12959824	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4940158	0.85[EUR][1000 genomes]
rs4940166	0.94[EUR][1000 genomes]
rs71355327	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7505878	0.95[EUR][1000 genomes]
rs8083581	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8086080	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8096094	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8099224	0.84[AMR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7237616	ZBTB7C	cis	parietal	SCAN

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45510400-45523600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr18:45516000-45523800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr18:45516200-45527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr18:45517600-45529000	Weak transcription	Right Ventricle	heart
5	chr18:45520400-45529600	Weak transcription	Stomach Mucosa	stomach
6	chr18:45521000-45523600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr18:45521200-45526200	Weak transcription	Hela-S3	cervix
8	chr18:45521400-45523400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:45521800-45523400	Enhancers	HSMM	muscle
10	chr18:45521800-45523400	Enhancers	HSMMtube	muscle
11	chr18:45521800-45523600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr18:45522200-45524000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr18:45522400-45523200	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr18:45522400-45523800	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr18:45522600-45523200	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr18:45522800-45523200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr18:45523000-45523800	Weak transcription	H1 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links