Variant report

Variant	rs8086080
Chromosome Location	chr18:45525620-45525621
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12956843	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12959824	0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4940158	0.86[EUR][1000 genomes]
rs4940166	0.94[EUR][1000 genomes]
rs71355327	0.86[AMR][1000 genomes]
rs7237616	0.83[ASW][hapmap];0.95[CEU][hapmap];0.88[CHB][hapmap];0.94[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.90[MKK][hapmap];1.00[TSI][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72916096	0.81[ASN][1000 genomes]
rs7505878	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7506149	0.83[AMR][1000 genomes]
rs7506362	0.84[AMR][1000 genomes]
rs8083581	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]
rs8096094	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8099224	0.89[AMR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909616	chr18:45467806-45844500	Active TSS Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1066479	chr18:45505569-45554507	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv1055669	chr18:45513090-45559375	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs8086080	ZBTB7C	cis	parietal	SCAN

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:45516200-45527600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:45517600-45529000	Weak transcription	Right Ventricle	heart
3	chr18:45520400-45529600	Weak transcription	Stomach Mucosa	stomach
4	chr18:45521200-45526200	Weak transcription	Hela-S3	cervix
5	chr18:45524200-45529000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:45525200-45525800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr18:45525200-45527200	Enhancers	Primary hematopoietic stem cells	blood
8	chr18:45525200-45527400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr18:45525200-45531200	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr18:45525400-45527400	Enhancers	Primary monocytes fromperipheralblood	blood
11	chr18:45525600-45527200	Enhancers	Monocytes-CD14+_RO01746	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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