Variant report
| Variant | rs9960087 |
|---|---|
| Chromosome Location | chr18:30614186-30614187 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs11081791 | 0.82[CHB][hapmap] |
| rs12958378 | 0.82[CHB][hapmap] |
| rs12958538 | 0.82[CHB][hapmap] |
| rs156366 | 0.84[AMR][1000 genomes] |
| rs166639 | 0.84[AMR][1000 genomes] |
| rs1941272 | 0.82[CHB][hapmap] |
| rs271469 | 0.84[AMR][1000 genomes] |
| rs271480 | 0.84[AMR][1000 genomes] |
| rs271482 | 0.84[AMR][1000 genomes] |
| rs271483 | 0.84[AMR][1000 genomes] |
| rs271484 | 0.84[AMR][1000 genomes] |
| rs271486 | 0.84[AMR][1000 genomes] |
| rs271487 | 0.84[AMR][1000 genomes] |
| rs273023 | 0.84[AMR][1000 genomes] |
| rs273024 | 0.84[AMR][1000 genomes] |
| rs273025 | 0.84[AMR][1000 genomes] |
| rs273026 | 0.84[AMR][1000 genomes] |
| rs273027 | 0.84[AMR][1000 genomes] |
| rs273028 | 0.84[AMR][1000 genomes] |
| rs4258697 | 0.82[AFR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4387665 | 0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs57411399 | 0.90[ASN][1000 genomes] |
| rs7234969 | 0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7236742 | 0.85[ASN][1000 genomes] |
| rs7238077 | 0.85[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs7239282 | 0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8090816 | 0.90[AMR][1000 genomes] |
| rs8093250 | 0.95[ASN][1000 genomes] |
| rs8096814 | 0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs9961301 | 0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv909527 | chr18:30548902-30908581 | Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv833617 | chr18:30555111-30693587 | Enhancers Weak transcription Flanking Active TSS Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1066607 | chr18:30562176-30623325 | Flanking Active TSS Weak transcription Enhancers Active TSS | Chromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv1058332 | chr18:30587430-30775498 | Enhancers Flanking Active TSS Active TSS Weak transcription | TF binding regionChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 5 | esv3359768 | chr18:30593003-30615360 | Enhancers Flanking Active TSS Active TSS Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | esv3424771 | chr18:30593003-30617800 | Active TSS Enhancers Weak transcription Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr18:30614000-30614600 | Enhancers | Rectal Mucosa Donor 31 | rectum |
| 2 | chr18:30614000-30616200 | Enhancers | HUVEC | blood vessel |
