Variant report

Variant	rs9961013
Chromosome Location	chr18:43740971-43740972
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:43739084..43741230-chr18:43849906..43852814,2	MCF-7	breast:
2	chr18:43734389..43736469-chr18:43738925..43741638,2	K562	blood:
3	chr18:43737450..43741302-chr18:43741650..43744283,3	MCF-7	breast:
4	chr18:43731595..43733351-chr18:43739410..43741644,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs28576132	1.00[AMR][1000 genomes]
rs28688826	1.00[AMR][1000 genomes]
rs490878	1.00[AMR][1000 genomes]
rs577375	1.00[AMR][1000 genomes]
rs9952471	1.00[AMR][1000 genomes]
rs9960770	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062024	chr18:43589516-43749410	Active TSS Strong transcription Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	nsv543694	chr18:43589516-43749410	Strong transcription Weak transcription Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43706200-43747800	Weak transcription	Brain Substantia Nigra	brain
2	chr18:43710600-43752800	Weak transcription	Fetal Brain Female	brain
3	chr18:43714000-43748400	Weak transcription	Ovary	ovary
4	chr18:43733200-43753200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr18:43733600-43746200	Weak transcription	HUES6 Cell Line	embryonic stem cell
6	chr18:43733600-43746400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr18:43733800-43744200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr18:43733800-43746200	Weak transcription	HUES48 Cell Line	embryonic stem cell
9	chr18:43734200-43746200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr18:43736400-43742400	Enhancers	Primary T cells fromperipheralblood	blood
11	chr18:43736400-43742400	Enhancers	Primary T helper cells PMA-I stimulated	--
12	chr18:43736400-43747800	Weak transcription	Thymus	Thymus
13	chr18:43736800-43746200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr18:43737200-43747800	Weak transcription	Spleen	Spleen
15	chr18:43737200-43749200	Weak transcription	HSMMtube	muscle
16	chr18:43737200-43749400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr18:43737600-43742000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr18:43737600-43753000	Weak transcription	Fetal Stomach	stomach
19	chr18:43739000-43742000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr18:43739000-43742000	Weak transcription	K562	blood
21	chr18:43739000-43743800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr18:43739000-43753200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr18:43739200-43741800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr18:43739600-43741200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
25	chr18:43739600-43741200	Enhancers	Primary T helper cells fromperipheralblood	blood
26	chr18:43739600-43742200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr18:43739600-43742400	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
28	chr18:43739800-43741000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr18:43739800-43741000	Enhancers	Stomach Mucosa	stomach
30	chr18:43739800-43741200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
31	chr18:43740000-43741000	Enhancers	Primary T cells from cord blood	blood
32	chr18:43740000-43741000	Enhancers	Primary T killer memory cells from peripheral blood	blood
33	chr18:43740000-43741000	Enhancers	A549	lung
34	chr18:43740000-43741000	Enhancers	HepG2	liver
35	chr18:43740000-43742200	Weak transcription	Placenta	Placenta
36	chr18:43740200-43741000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr18:43740200-43749200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr18:43740400-43742000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
39	chr18:43740600-43741000	Enhancers	Hela-S3	cervix
40	chr18:43740600-43749200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr18:43740800-43742000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr18:43740800-43747800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood

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