Variant report

Variant	rs9965848
Chromosome Location	chr18:13261896-13261897
allele	A/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:13261882..13264045-chr18:13540401..13542351,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000168675	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11080638	0.83[ASN][1000 genomes]
rs11661574	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909408	chr18:13122618-13308950	ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv909410	chr18:13151544-13308950	Enhancers ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv3372035	chr18:13260052-13264450	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	esv3448583	chr18:13261252-13264050	Weak transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	esv3405323	chr18:13261252-13267450	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
6	esv1008130	chr18:13261871-13263196	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	esv12934	chr18:13261871-13263406	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Strong transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:76 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:13243600-13278200	Weak transcription	Dnd41	blood
2	chr18:13253000-13267800	Weak transcription	Gastric	stomach
3	chr18:13256200-13262400	Enhancers	Brain Anterior Caudate	brain
4	chr18:13256800-13268400	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr18:13258600-13262200	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr18:13258600-13262400	Enhancers	Fetal Heart	heart
7	chr18:13258600-13268600	Enhancers	Right Ventricle	heart
8	chr18:13258800-13262000	Enhancers	Brain Cingulate Gyrus	brain
9	chr18:13258800-13262000	Enhancers	Fetal Muscle Leg	muscle
10	chr18:13258800-13262200	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr18:13258800-13262200	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
12	chr18:13258800-13262200	Enhancers	Duodenum Smooth Muscle	Duodenum
13	chr18:13258800-13262200	Enhancers	Left Ventricle	heart
14	chr18:13258800-13262400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr18:13258800-13262400	Enhancers	Colon Smooth Muscle	Colon
16	chr18:13258800-13262400	Enhancers	Fetal Lung	lung
17	chr18:13258800-13262400	Enhancers	Placenta	Placenta
18	chr18:13258800-13262400	Enhancers	Spleen	Spleen
19	chr18:13258800-13262400	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr18:13259000-13262000	Enhancers	Fetal Stomach	stomach
21	chr18:13259000-13262200	Enhancers	Brain Hippocampus Middle	brain
22	chr18:13259000-13262200	Enhancers	Right Atrium	heart
23	chr18:13259200-13262000	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr18:13259200-13262600	Enhancers	Lung	lung
25	chr18:13259200-13280000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr18:13259600-13262200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
27	chr18:13259800-13262000	Enhancers	Primary T cells fromperipheralblood	blood
28	chr18:13259800-13262200	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr18:13259800-13262200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr18:13259800-13262400	Enhancers	Breast Myoepithelial Primary Cells	Breast
31	chr18:13259800-13262400	Enhancers	Primary hematopoietic stem cells	blood
32	chr18:13259800-13262400	Enhancers	Primary hematopoietic stem cells short term culture	blood
33	chr18:13259800-13262400	Enhancers	Brain Substantia Nigra	brain
34	chr18:13259800-13262400	Enhancers	Esophagus	oesophagus
35	chr18:13259800-13262400	Enhancers	Fetal Muscle Trunk	muscle
36	chr18:13259800-13267800	Enhancers	Fetal Brain Male	brain
37	chr18:13260000-13262200	Enhancers	Brain Angular Gyrus	brain
38	chr18:13260000-13262400	Enhancers	Primary T helper cells PMA-I stimulated	--
39	chr18:13260000-13263800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr18:13260000-13266200	Enhancers	Rectal Smooth Muscle	rectum
41	chr18:13260200-13262200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
42	chr18:13260200-13262200	Enhancers	Primary T helper cells fromperipheralblood	blood
43	chr18:13260200-13262200	Enhancers	Aorta	Aorta
44	chr18:13260200-13262200	Flanking Active TSS	Stomach Smooth Muscle	stomach
45	chr18:13260200-13262400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr18:13260200-13262400	Enhancers	Colonic Mucosa	Colon
47	chr18:13260400-13262000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr18:13260400-13262400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
49	chr18:13260400-13262400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr18:13260600-13262400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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